Experiment: Trans-2-methyl-2-butenoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS09415 and ABZR87_RS09420 overlap by 4 nucleotides ABZR87_RS09420 and ABZR87_RS09425 are separated by 159 nucleotides ABZR87_RS09425 and ABZR87_RS09430 are separated by 176 nucleotides
ABZR87_RS09415: ABZR87_RS09415 - HAD-IA family hydrolase, at 1,999,095 to 1,999,784
_RS09415
ABZR87_RS09420: ABZR87_RS09420 - bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG, at 1,999,781 to 2,000,497
_RS09420
ABZR87_RS09425: ABZR87_RS09425 - glycine zipper 2TM domain-containing protein, at 2,000,657 to 2,001,166
_RS09425
ABZR87_RS09430: ABZR87_RS09430 - outer membrane protein OmpA, at 2,001,343 to 2,001,999
_RS09430
Position (kb)
2000
2001
2002 Strain fitness (log2 ratio)
-2
-1
0
1 at 2000.525 kb on - strand at 2000.525 kb on - strand at 2000.525 kb on - strand at 2000.525 kb on - strand at 2000.660 kb on - strand at 2000.679 kb on + strand at 2000.679 kb on + strand at 2000.679 kb on + strand at 2000.744 kb on + strand, within ABZR87_RS09425 at 2000.744 kb on + strand, within ABZR87_RS09425 at 2000.744 kb on + strand, within ABZR87_RS09425 at 2000.746 kb on + strand, within ABZR87_RS09425 at 2000.777 kb on + strand, within ABZR87_RS09425 at 2000.778 kb on - strand, within ABZR87_RS09425 at 2000.795 kb on + strand, within ABZR87_RS09425 at 2000.795 kb on + strand, within ABZR87_RS09425 at 2000.796 kb on - strand, within ABZR87_RS09425 at 2000.829 kb on - strand, within ABZR87_RS09425 at 2000.829 kb on - strand, within ABZR87_RS09425 at 2000.951 kb on - strand, within ABZR87_RS09425 at 2000.990 kb on + strand, within ABZR87_RS09425 at 2000.990 kb on + strand, within ABZR87_RS09425 at 2000.990 kb on + strand, within ABZR87_RS09425 at 2000.991 kb on - strand, within ABZR87_RS09425 at 2000.991 kb on - strand, within ABZR87_RS09425 at 2001.158 kb on + strand at 2001.158 kb on + strand at 2001.158 kb on + strand at 2001.159 kb on - strand at 2001.159 kb on - strand at 2001.159 kb on - strand at 2001.159 kb on - strand at 2001.159 kb on - strand at 2001.164 kb on + strand at 2001.164 kb on + strand at 2001.165 kb on - strand at 2001.165 kb on - strand at 2001.177 kb on + strand at 2001.245 kb on + strand at 2001.290 kb on + strand at 2001.290 kb on + strand at 2001.290 kb on + strand at 2001.291 kb on - strand at 2001.291 kb on - strand at 2001.291 kb on - strand at 2001.292 kb on + strand at 2001.293 kb on - strand at 2001.293 kb on - strand at 2002.064 kb on - strand at 2002.078 kb on - strand at 2002.079 kb on + strand at 2002.079 kb on + strand at 2002.161 kb on + strand at 2002.161 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trans-2-methyl-2-butenoic (C) remove 2,000,525 - +0.7 2,000,525 - -0.5 2,000,525 - +0.4 2,000,525 - +0.6 2,000,660 - +0.3 2,000,679 + +0.4 2,000,679 + +0.0 2,000,679 + +0.1 2,000,744 + ABZR87_RS09425 0.17 -0.0 2,000,744 + ABZR87_RS09425 0.17 +0.2 2,000,744 + ABZR87_RS09425 0.17 +0.3 2,000,746 + ABZR87_RS09425 0.17 -1.8 2,000,777 + ABZR87_RS09425 0.24 -0.5 2,000,778 - ABZR87_RS09425 0.24 -0.1 2,000,795 + ABZR87_RS09425 0.27 +0.5 2,000,795 + ABZR87_RS09425 0.27 -0.1 2,000,796 - ABZR87_RS09425 0.27 -0.7 2,000,829 - ABZR87_RS09425 0.34 -0.1 2,000,829 - ABZR87_RS09425 0.34 -0.3 2,000,951 - ABZR87_RS09425 0.58 +0.5 2,000,990 + ABZR87_RS09425 0.65 -0.3 2,000,990 + ABZR87_RS09425 0.65 +0.2 2,000,990 + ABZR87_RS09425 0.65 +1.5 2,000,991 - ABZR87_RS09425 0.65 -0.6 2,000,991 - ABZR87_RS09425 0.65 +1.4 2,001,158 + +0.1 2,001,158 + +0.5 2,001,158 + -0.4 2,001,159 - -1.0 2,001,159 - -0.1 2,001,159 - +0.9 2,001,159 - +0.5 2,001,159 - -0.3 2,001,164 + -1.7 2,001,164 + -0.8 2,001,165 - +0.5 2,001,165 - -0.1 2,001,177 + +0.1 2,001,245 + -0.0 2,001,290 + +0.2 2,001,290 + -0.3 2,001,290 + +0.2 2,001,291 - +0.7 2,001,291 - -0.1 2,001,291 - -0.5 2,001,292 + +0.8 2,001,293 - +0.9 2,001,293 - +0.3 2,002,064 - +0.2 2,002,078 - +0.4 2,002,079 + +0.5 2,002,079 + +0.4 2,002,161 + -1.7 2,002,161 + -1.4
Or see this region's nucleotide sequence