Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00340

Experiment: Trans-2-methyl-2-butenoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00330 and ABZR87_RS00335 are separated by 180 nucleotidesABZR87_RS00335 and ABZR87_RS00340 are separated by 13 nucleotidesABZR87_RS00340 and ABZR87_RS00345 are separated by 177 nucleotides ABZR87_RS00330: ABZR87_RS00330 - DNA repair protein RadC, at 67,271 to 67,945 _RS00330 ABZR87_RS00335: ABZR87_RS00335 - 50S ribosomal protein L28, at 68,126 to 68,359 _RS00335 ABZR87_RS00340: ABZR87_RS00340 - 50S ribosomal protein L33, at 68,373 to 68,543 _RS00340 ABZR87_RS00345: ABZR87_RS00345 - L-aspartate oxidase, at 68,721 to 70,322 _RS00345 Position (kb) 68 69Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 67.505 kb on + strand, within ABZR87_RS00330at 67.505 kb on + strand, within ABZR87_RS00330at 67.505 kb on + strand, within ABZR87_RS00330at 67.505 kb on + strand, within ABZR87_RS00330at 67.506 kb on - strand, within ABZR87_RS00330at 67.506 kb on - strand, within ABZR87_RS00330at 67.506 kb on - strand, within ABZR87_RS00330at 67.506 kb on - strand, within ABZR87_RS00330at 67.659 kb on + strand, within ABZR87_RS00330at 67.659 kb on + strand, within ABZR87_RS00330at 67.659 kb on + strand, within ABZR87_RS00330at 67.660 kb on - strand, within ABZR87_RS00330at 67.665 kb on + strand, within ABZR87_RS00330at 67.665 kb on + strand, within ABZR87_RS00330at 67.665 kb on + strand, within ABZR87_RS00330at 67.665 kb on + strand, within ABZR87_RS00330at 67.665 kb on + strand, within ABZR87_RS00330at 67.665 kb on + strand, within ABZR87_RS00330at 67.665 kb on + strand, within ABZR87_RS00330at 67.665 kb on + strand, within ABZR87_RS00330at 67.665 kb on + strand, within ABZR87_RS00330at 67.665 kb on + strand, within ABZR87_RS00330at 67.666 kb on - strand, within ABZR87_RS00330at 67.666 kb on - strand, within ABZR87_RS00330at 67.666 kb on - strand, within ABZR87_RS00330at 67.916 kb on + strandat 67.916 kb on + strandat 67.917 kb on - strandat 67.917 kb on - strandat 68.357 kb on + strandat 68.358 kb on - strandat 68.362 kb on - strandat 68.362 kb on - strandat 68.368 kb on + strandat 68.368 kb on + strandat 68.368 kb on + strandat 68.369 kb on - strandat 68.423 kb on + strand, within ABZR87_RS00340at 68.424 kb on - strand, within ABZR87_RS00340at 68.521 kb on - strand, within ABZR87_RS00340at 68.521 kb on - strand, within ABZR87_RS00340at 68.541 kb on + strandat 68.541 kb on + strandat 68.542 kb on - strandat 68.542 kb on - strandat 68.542 kb on - strandat 68.542 kb on - strandat 68.542 kb on - strandat 68.646 kb on + strandat 68.683 kb on + strandat 68.683 kb on + strandat 68.683 kb on + strandat 68.684 kb on - strandat 68.783 kb on - strandat 68.783 kb on - strandat 68.955 kb on + strand, within ABZR87_RS00345at 68.955 kb on + strand, within ABZR87_RS00345at 68.955 kb on + strand, within ABZR87_RS00345at 68.955 kb on + strand, within ABZR87_RS00345at 68.955 kb on + strand, within ABZR87_RS00345at 68.956 kb on - strand, within ABZR87_RS00345at 69.279 kb on - strand, within ABZR87_RS00345at 69.279 kb on - strand, within ABZR87_RS00345at 69.324 kb on + strand, within ABZR87_RS00345at 69.324 kb on + strand, within ABZR87_RS00345at 69.324 kb on + strand, within ABZR87_RS00345at 69.324 kb on + strand, within ABZR87_RS00345at 69.324 kb on + strand, within ABZR87_RS00345at 69.324 kb on + strand, within ABZR87_RS00345at 69.325 kb on - strand, within ABZR87_RS00345at 69.325 kb on - strand, within ABZR87_RS00345at 69.325 kb on - strand, within ABZR87_RS00345at 69.325 kb on - strand, within ABZR87_RS00345at 69.325 kb on - strand, within ABZR87_RS00345at 69.325 kb on - strand, within ABZR87_RS00345at 69.325 kb on - strand, within ABZR87_RS00345at 69.330 kb on + strand, within ABZR87_RS00345at 69.330 kb on + strand, within ABZR87_RS00345at 69.331 kb on - strand, within ABZR87_RS00345at 69.331 kb on - strand, within ABZR87_RS00345at 69.331 kb on - strand, within ABZR87_RS00345at 69.331 kb on - strand, within ABZR87_RS00345at 69.332 kb on + strand, within ABZR87_RS00345at 69.333 kb on - strand, within ABZR87_RS00345at 69.333 kb on - strand, within ABZR87_RS00345at 69.333 kb on - strand, within ABZR87_RS00345at 69.333 kb on - strand, within ABZR87_RS00345at 69.333 kb on - strand, within ABZR87_RS00345at 69.438 kb on + strand, within ABZR87_RS00345at 69.438 kb on + strand, within ABZR87_RS00345at 69.439 kb on - strand, within ABZR87_RS00345

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Per-strain Table

Position Strand Gene LocusTag Fraction Trans-2-methyl-2-butenoic (C)
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67,505 + ABZR87_RS00330 0.35 +0.4
67,505 + ABZR87_RS00330 0.35 -0.1
67,505 + ABZR87_RS00330 0.35 -0.1
67,505 + ABZR87_RS00330 0.35 +1.0
67,506 - ABZR87_RS00330 0.35 +0.5
67,506 - ABZR87_RS00330 0.35 +2.0
67,506 - ABZR87_RS00330 0.35 -0.7
67,506 - ABZR87_RS00330 0.35 +0.1
67,659 + ABZR87_RS00330 0.57 -1.1
67,659 + ABZR87_RS00330 0.57 +0.4
67,659 + ABZR87_RS00330 0.57 -0.2
67,660 - ABZR87_RS00330 0.58 +0.2
67,665 + ABZR87_RS00330 0.58 +0.1
67,665 + ABZR87_RS00330 0.58 +1.2
67,665 + ABZR87_RS00330 0.58 +0.3
67,665 + ABZR87_RS00330 0.58 +0.6
67,665 + ABZR87_RS00330 0.58 +0.7
67,665 + ABZR87_RS00330 0.58 -0.2
67,665 + ABZR87_RS00330 0.58 +0.1
67,665 + ABZR87_RS00330 0.58 +0.6
67,665 + ABZR87_RS00330 0.58 -0.4
67,665 + ABZR87_RS00330 0.58 +0.7
67,666 - ABZR87_RS00330 0.59 -0.2
67,666 - ABZR87_RS00330 0.59 -0.4
67,666 - ABZR87_RS00330 0.59 -0.1
67,916 + +1.3
67,916 + -1.0
67,917 - +0.6
67,917 - -0.7
68,357 + +0.5
68,358 - +0.5
68,362 - -0.7
68,362 - -0.1
68,368 + +0.1
68,368 + +0.2
68,368 + -1.9
68,369 - +0.7
68,423 + ABZR87_RS00340 0.29 -0.4
68,424 - ABZR87_RS00340 0.30 +0.3
68,521 - ABZR87_RS00340 0.87 -0.6
68,521 - ABZR87_RS00340 0.87 +0.1
68,541 + +0.5
68,541 + +0.3
68,542 - +0.5
68,542 - +0.9
68,542 - -0.1
68,542 - +0.1
68,542 - +0.4
68,646 + -0.6
68,683 + -0.4
68,683 + +0.2
68,683 + +0.2
68,684 - -0.7
68,783 - -3.1
68,783 - -0.6
68,955 + ABZR87_RS00345 0.15 -0.9
68,955 + ABZR87_RS00345 0.15 -1.2
68,955 + ABZR87_RS00345 0.15 -0.8
68,955 + ABZR87_RS00345 0.15 -1.2
68,955 + ABZR87_RS00345 0.15 -0.9
68,956 - ABZR87_RS00345 0.15 -0.9
69,279 - ABZR87_RS00345 0.35 -1.4
69,279 - ABZR87_RS00345 0.35 -0.7
69,324 + ABZR87_RS00345 0.38 -0.9
69,324 + ABZR87_RS00345 0.38 -0.9
69,324 + ABZR87_RS00345 0.38 -1.1
69,324 + ABZR87_RS00345 0.38 -1.2
69,324 + ABZR87_RS00345 0.38 -1.1
69,324 + ABZR87_RS00345 0.38 -0.7
69,325 - ABZR87_RS00345 0.38 +0.1
69,325 - ABZR87_RS00345 0.38 -0.9
69,325 - ABZR87_RS00345 0.38 -1.3
69,325 - ABZR87_RS00345 0.38 +0.1
69,325 - ABZR87_RS00345 0.38 -1.4
69,325 - ABZR87_RS00345 0.38 -1.6
69,325 - ABZR87_RS00345 0.38 -0.3
69,330 + ABZR87_RS00345 0.38 +0.0
69,330 + ABZR87_RS00345 0.38 -0.5
69,331 - ABZR87_RS00345 0.38 -1.0
69,331 - ABZR87_RS00345 0.38 -1.6
69,331 - ABZR87_RS00345 0.38 -0.7
69,331 - ABZR87_RS00345 0.38 -1.0
69,332 + ABZR87_RS00345 0.38 -0.5
69,333 - ABZR87_RS00345 0.38 -0.5
69,333 - ABZR87_RS00345 0.38 -0.6
69,333 - ABZR87_RS00345 0.38 -1.4
69,333 - ABZR87_RS00345 0.38 -0.2
69,333 - ABZR87_RS00345 0.38 -0.7
69,438 + ABZR87_RS00345 0.45 -1.3
69,438 + ABZR87_RS00345 0.45 -0.1
69,439 - ABZR87_RS00345 0.45 -1.1

Or see this region's nucleotide sequence