Experiment: Trans-2-methyl-2-butenoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00190 and ABZR87_RS00195 are separated by 2 nucleotides ABZR87_RS00195 and ABZR87_RS00200 are separated by 20 nucleotides ABZR87_RS00200 and ABZR87_RS00205 overlap by 4 nucleotides
ABZR87_RS00190: ABZR87_RS00190 - sulfate adenylyltransferase subunit 1, at 37,104 to 38,411
_RS00190
ABZR87_RS00195: ABZR87_RS00195 - sulfate adenylyltransferase subunit CysD, at 38,414 to 39,364
_RS00195
ABZR87_RS00200: ABZR87_RS00200 - phosphoadenylyl-sulfate reductase, at 39,385 to 40,212
_RS00200
ABZR87_RS00205: ABZR87_RS00205 - DUF934 domain-containing protein, at 40,209 to 40,754
_RS00205
Position (kb) 38
39
40 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 37.639 kb on + strand, within ABZR87_RS00190 at 37.640 kb on - strand, within ABZR87_RS00190 at 37.640 kb on - strand, within ABZR87_RS00190 at 37.777 kb on + strand, within ABZR87_RS00190 at 37.778 kb on - strand, within ABZR87_RS00190 at 37.787 kb on + strand, within ABZR87_RS00190 at 37.787 kb on + strand, within ABZR87_RS00190 at 37.787 kb on + strand, within ABZR87_RS00190 at 37.787 kb on + strand, within ABZR87_RS00190 at 37.787 kb on + strand, within ABZR87_RS00190 at 37.788 kb on - strand, within ABZR87_RS00190 at 37.788 kb on - strand, within ABZR87_RS00190 at 37.788 kb on - strand, within ABZR87_RS00190 at 37.840 kb on + strand, within ABZR87_RS00190 at 37.840 kb on + strand, within ABZR87_RS00190 at 37.840 kb on + strand, within ABZR87_RS00190 at 37.840 kb on + strand, within ABZR87_RS00190 at 37.882 kb on + strand, within ABZR87_RS00190 at 38.107 kb on + strand, within ABZR87_RS00190 at 38.108 kb on - strand, within ABZR87_RS00190 at 38.164 kb on + strand, within ABZR87_RS00190 at 38.164 kb on + strand, within ABZR87_RS00190 at 38.164 kb on + strand, within ABZR87_RS00190 at 38.165 kb on - strand, within ABZR87_RS00190 at 38.165 kb on - strand, within ABZR87_RS00190 at 38.255 kb on + strand, within ABZR87_RS00190 at 38.255 kb on + strand, within ABZR87_RS00190 at 38.317 kb on + strand at 38.318 kb on - strand at 38.421 kb on + strand at 38.697 kb on + strand, within ABZR87_RS00195 at 38.697 kb on + strand, within ABZR87_RS00195 at 38.698 kb on - strand, within ABZR87_RS00195 at 38.698 kb on - strand, within ABZR87_RS00195 at 38.733 kb on + strand, within ABZR87_RS00195 at 38.734 kb on - strand, within ABZR87_RS00195 at 38.811 kb on + strand, within ABZR87_RS00195 at 38.812 kb on - strand, within ABZR87_RS00195 at 39.279 kb on + strand at 39.279 kb on + strand at 39.279 kb on + strand at 39.280 kb on - strand at 39.280 kb on - strand at 39.280 kb on - strand at 39.546 kb on - strand, within ABZR87_RS00200 at 39.593 kb on + strand, within ABZR87_RS00200 at 39.635 kb on + strand, within ABZR87_RS00200 at 39.635 kb on + strand, within ABZR87_RS00200 at 39.806 kb on + strand, within ABZR87_RS00200 at 39.836 kb on + strand, within ABZR87_RS00200 at 39.836 kb on + strand, within ABZR87_RS00200 at 39.887 kb on + strand, within ABZR87_RS00200 at 40.131 kb on - strand at 40.131 kb on - strand at 40.131 kb on - strand at 40.276 kb on + strand, within ABZR87_RS00205
Per-strain Table
Position Strand Gene LocusTag Fraction Trans-2-methyl-2-butenoic (C) remove 37,639 + ABZR87_RS00190 0.41 -3.5 37,640 - ABZR87_RS00190 0.41 -2.6 37,640 - ABZR87_RS00190 0.41 -3.2 37,777 + ABZR87_RS00190 0.51 -3.3 37,778 - ABZR87_RS00190 0.52 -1.5 37,787 + ABZR87_RS00190 0.52 -5.1 37,787 + ABZR87_RS00190 0.52 -3.0 37,787 + ABZR87_RS00190 0.52 -1.2 37,787 + ABZR87_RS00190 0.52 -3.6 37,787 + ABZR87_RS00190 0.52 -4.2 37,788 - ABZR87_RS00190 0.52 -3.1 37,788 - ABZR87_RS00190 0.52 -4.0 37,788 - ABZR87_RS00190 0.52 -3.5 37,840 + ABZR87_RS00190 0.56 -1.7 37,840 + ABZR87_RS00190 0.56 -3.8 37,840 + ABZR87_RS00190 0.56 -1.3 37,840 + ABZR87_RS00190 0.56 -3.4 37,882 + ABZR87_RS00190 0.59 -2.7 38,107 + ABZR87_RS00190 0.77 -3.3 38,108 - ABZR87_RS00190 0.77 -2.8 38,164 + ABZR87_RS00190 0.81 -3.6 38,164 + ABZR87_RS00190 0.81 -3.0 38,164 + ABZR87_RS00190 0.81 -3.7 38,165 - ABZR87_RS00190 0.81 -4.0 38,165 - ABZR87_RS00190 0.81 -4.1 38,255 + ABZR87_RS00190 0.88 -3.0 38,255 + ABZR87_RS00190 0.88 -2.5 38,317 + -1.7 38,318 - -2.8 38,421 + -2.9 38,697 + ABZR87_RS00195 0.30 -2.8 38,697 + ABZR87_RS00195 0.30 -4.1 38,698 - ABZR87_RS00195 0.30 -4.8 38,698 - ABZR87_RS00195 0.30 -2.8 38,733 + ABZR87_RS00195 0.34 -1.4 38,734 - ABZR87_RS00195 0.34 -3.0 38,811 + ABZR87_RS00195 0.42 -3.9 38,812 - ABZR87_RS00195 0.42 -0.6 39,279 + -2.0 39,279 + -1.2 39,279 + -4.0 39,280 - -2.4 39,280 - -3.2 39,280 - -3.7 39,546 - ABZR87_RS00200 0.19 -0.2 39,593 + ABZR87_RS00200 0.25 -2.5 39,635 + ABZR87_RS00200 0.30 -2.5 39,635 + ABZR87_RS00200 0.30 -1.8 39,806 + ABZR87_RS00200 0.51 -3.6 39,836 + ABZR87_RS00200 0.54 -2.9 39,836 + ABZR87_RS00200 0.54 -3.1 39,887 + ABZR87_RS00200 0.61 -2.6 40,131 - -3.5 40,131 - -1.5 40,131 - -1.6 40,276 + ABZR87_RS00205 0.12 -2.5
Or see this region's nucleotide sequence