Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29125

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS29115 and RR42_RS29120 are separated by 8 nucleotidesRR42_RS29120 and RR42_RS29125 are separated by 176 nucleotidesRR42_RS29125 and RR42_RS29130 are separated by 45 nucleotides RR42_RS29115: RR42_RS29115 - LysR family transcriptional regulator, at 1,888,706 to 1,889,632 _RS29115 RR42_RS29120: RR42_RS29120 - alpha-dehydro-beta-deoxy-D-glucarate aldolase, at 1,889,641 to 1,890,408 _RS29120 RR42_RS29125: RR42_RS29125 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 1,890,585 to 1,890,959 _RS29125 RR42_RS29130: RR42_RS29130 - dehydrogenase, at 1,891,005 to 1,892,099 _RS29130 Position (kb) 1890 1891Strain fitness (log2 ratio) -1 0 1at 1889.976 kb on + strand, within RR42_RS29120at 1889.976 kb on + strand, within RR42_RS29120at 1889.977 kb on - strand, within RR42_RS29120at 1889.977 kb on - strand, within RR42_RS29120at 1889.977 kb on - strand, within RR42_RS29120at 1889.977 kb on - strand, within RR42_RS29120at 1889.999 kb on + strand, within RR42_RS29120at 1890.000 kb on - strand, within RR42_RS29120at 1890.043 kb on + strand, within RR42_RS29120at 1891.283 kb on + strand, within RR42_RS29130at 1891.283 kb on + strand, within RR42_RS29130at 1891.284 kb on - strand, within RR42_RS29130at 1891.284 kb on - strand, within RR42_RS29130at 1891.384 kb on + strand, within RR42_RS29130at 1891.384 kb on + strand, within RR42_RS29130at 1891.385 kb on - strand, within RR42_RS29130at 1891.385 kb on - strand, within RR42_RS29130at 1891.637 kb on - strand, within RR42_RS29130at 1891.668 kb on + strand, within RR42_RS29130at 1891.774 kb on - strand, within RR42_RS29130at 1891.774 kb on - strand, within RR42_RS29130at 1891.774 kb on - strand, within RR42_RS29130at 1891.774 kb on - strand, within RR42_RS29130at 1891.936 kb on + strand, within RR42_RS29130at 1891.936 kb on + strand, within RR42_RS29130at 1891.937 kb on - strand, within RR42_RS29130at 1891.937 kb on - strand, within RR42_RS29130at 1891.937 kb on - strand, within RR42_RS29130at 1891.937 kb on - strand, within RR42_RS29130at 1891.937 kb on - strand, within RR42_RS29130

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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1,889,976 + RR42_RS29120 0.44 -0.1
1,889,976 + RR42_RS29120 0.44 +0.7
1,889,977 - RR42_RS29120 0.44 +1.1
1,889,977 - RR42_RS29120 0.44 +0.2
1,889,977 - RR42_RS29120 0.44 +0.5
1,889,977 - RR42_RS29120 0.44 -0.2
1,889,999 + RR42_RS29120 0.47 +0.3
1,890,000 - RR42_RS29120 0.47 +0.6
1,890,043 + RR42_RS29120 0.52 +0.5
1,891,283 + RR42_RS29130 0.25 +0.8
1,891,283 + RR42_RS29130 0.25 +0.3
1,891,284 - RR42_RS29130 0.25 -1.0
1,891,284 - RR42_RS29130 0.25 -1.2
1,891,384 + RR42_RS29130 0.35 -0.0
1,891,384 + RR42_RS29130 0.35 -0.6
1,891,385 - RR42_RS29130 0.35 +0.2
1,891,385 - RR42_RS29130 0.35 +0.3
1,891,637 - RR42_RS29130 0.58 -0.7
1,891,668 + RR42_RS29130 0.61 +0.4
1,891,774 - RR42_RS29130 0.70 -0.4
1,891,774 - RR42_RS29130 0.70 +0.2
1,891,774 - RR42_RS29130 0.70 +0.0
1,891,774 - RR42_RS29130 0.70 +0.1
1,891,936 + RR42_RS29130 0.85 -0.0
1,891,936 + RR42_RS29130 0.85 +0.6
1,891,937 - RR42_RS29130 0.85 -1.1
1,891,937 - RR42_RS29130 0.85 -0.8
1,891,937 - RR42_RS29130 0.85 -0.4
1,891,937 - RR42_RS29130 0.85 +0.0
1,891,937 - RR42_RS29130 0.85 +0.4

Or see this region's nucleotide sequence