Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS27085 and RR42_RS27090 are separated by 276 nucleotides RR42_RS27090 and RR42_RS27095 are separated by 625 nucleotides
RR42_RS27085: RR42_RS27085 - hypothetical protein, at 1,428,996 to 1,429,961
_RS27085
RR42_RS27090: RR42_RS27090 - chemotaxis protein CheV, at 1,430,238 to 1,431,200
_RS27090
RR42_RS27095: RR42_RS27095 - hypothetical protein, at 1,431,826 to 1,432,677
_RS27095
Position (kb)
1430
1431
1432 Strain fitness (log2 ratio)
-1
0
1 at 1429.287 kb on + strand, within RR42_RS27085 at 1429.338 kb on + strand, within RR42_RS27085 at 1429.338 kb on + strand, within RR42_RS27085 at 1429.338 kb on + strand, within RR42_RS27085 at 1429.339 kb on - strand, within RR42_RS27085 at 1429.462 kb on - strand, within RR42_RS27085 at 1429.908 kb on + strand at 1429.908 kb on + strand at 1429.908 kb on + strand at 1429.909 kb on - strand at 1429.909 kb on - strand at 1429.909 kb on - strand at 1430.031 kb on + strand at 1430.032 kb on - strand at 1430.032 kb on - strand at 1430.238 kb on - strand at 1430.285 kb on + strand at 1430.390 kb on - strand, within RR42_RS27090 at 1430.390 kb on - strand, within RR42_RS27090 at 1430.639 kb on + strand, within RR42_RS27090 at 1431.138 kb on + strand at 1431.139 kb on - strand at 1431.139 kb on - strand at 1431.139 kb on - strand at 1431.139 kb on - strand at 1431.348 kb on - strand at 1431.523 kb on - strand at 1431.529 kb on - strand at 1431.529 kb on - strand at 1432.151 kb on + strand, within RR42_RS27095
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 1,429,287 + RR42_RS27085 0.30 -1.4 1,429,338 + RR42_RS27085 0.35 -0.2 1,429,338 + RR42_RS27085 0.35 -0.0 1,429,338 + RR42_RS27085 0.35 +0.1 1,429,339 - RR42_RS27085 0.36 -0.5 1,429,462 - RR42_RS27085 0.48 -0.1 1,429,908 + +0.5 1,429,908 + +0.2 1,429,908 + -0.4 1,429,909 - +0.0 1,429,909 - +0.9 1,429,909 - +0.9 1,430,031 + -0.0 1,430,032 - -0.5 1,430,032 - +0.1 1,430,238 - +0.2 1,430,285 + -1.2 1,430,390 - RR42_RS27090 0.16 +0.8 1,430,390 - RR42_RS27090 0.16 -1.2 1,430,639 + RR42_RS27090 0.42 -1.1 1,431,138 + -0.4 1,431,139 - -0.3 1,431,139 - -0.7 1,431,139 - -0.2 1,431,139 - -0.8 1,431,348 - +0.2 1,431,523 - +1.4 1,431,529 - -0.4 1,431,529 - +0.5 1,432,151 + RR42_RS27095 0.38 +0.4
Or see this region's nucleotide sequence