Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26905 and RR42_RS26910 are separated by 68 nucleotides RR42_RS26910 and RR42_RS26915 are separated by 78 nucleotides
RR42_RS26905: RR42_RS26905 - methylcrotonoyl-CoA carboxylase, at 1,390,729 to 1,392,336
_RS26905
RR42_RS26910: RR42_RS26910 - isovaleryl-CoA dehydrogenase, at 1,392,405 to 1,393,586
_RS26910
RR42_RS26915: RR42_RS26915 - AMP-binding protein, at 1,393,665 to 1,395,386
_RS26915
Position (kb)
1392
1393
1394 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1391.468 kb on + strand, within RR42_RS26905 at 1391.756 kb on + strand, within RR42_RS26905 at 1391.835 kb on - strand, within RR42_RS26905 at 1391.915 kb on + strand, within RR42_RS26905 at 1391.987 kb on + strand, within RR42_RS26905 at 1391.988 kb on - strand, within RR42_RS26905 at 1391.988 kb on - strand, within RR42_RS26905 at 1391.988 kb on - strand, within RR42_RS26905 at 1392.092 kb on + strand, within RR42_RS26905 at 1392.148 kb on + strand, within RR42_RS26905 at 1393.602 kb on - strand at 1393.605 kb on + strand at 1393.605 kb on + strand at 1393.605 kb on + strand at 1393.606 kb on - strand at 1393.742 kb on + strand at 1393.790 kb on - strand at 1393.790 kb on - strand at 1393.841 kb on + strand, within RR42_RS26915 at 1393.885 kb on + strand, within RR42_RS26915 at 1393.886 kb on - strand, within RR42_RS26915 at 1394.023 kb on + strand, within RR42_RS26915 at 1394.023 kb on + strand, within RR42_RS26915 at 1394.023 kb on + strand, within RR42_RS26915 at 1394.110 kb on + strand, within RR42_RS26915
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 1,391,468 + RR42_RS26905 0.46 -0.8 1,391,756 + RR42_RS26905 0.64 -4.2 1,391,835 - RR42_RS26905 0.69 -1.4 1,391,915 + RR42_RS26905 0.74 -0.9 1,391,987 + RR42_RS26905 0.78 -2.3 1,391,988 - RR42_RS26905 0.78 -2.7 1,391,988 - RR42_RS26905 0.78 +0.2 1,391,988 - RR42_RS26905 0.78 -2.7 1,392,092 + RR42_RS26905 0.85 -1.6 1,392,148 + RR42_RS26905 0.88 -2.0 1,393,602 - -0.6 1,393,605 + -1.0 1,393,605 + -2.7 1,393,605 + -2.1 1,393,606 - -2.7 1,393,742 + -0.3 1,393,790 - +0.4 1,393,790 - -0.2 1,393,841 + RR42_RS26915 0.10 -1.8 1,393,885 + RR42_RS26915 0.13 -1.7 1,393,886 - RR42_RS26915 0.13 -0.5 1,394,023 + RR42_RS26915 0.21 -1.4 1,394,023 + RR42_RS26915 0.21 +0.5 1,394,023 + RR42_RS26915 0.21 -0.9 1,394,110 + RR42_RS26915 0.26 +1.8
Or see this region's nucleotide sequence