Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25210 and RR42_RS25215 are separated by 139 nucleotides RR42_RS25215 and RR42_RS25220 are separated by 154 nucleotides RR42_RS25220 and RR42_RS25225 are separated by 10 nucleotides RR42_RS25225 and RR42_RS25230 overlap by 1 nucleotides
RR42_RS25210: RR42_RS25210 - acetyl-CoA acetyltransferase, at 997,354 to 998,538
_RS25210
RR42_RS25215: RR42_RS25215 - DSBA oxidoreductase, at 998,678 to 999,301
_RS25215
RR42_RS25220: RR42_RS25220 - NADP transhydrogenase subunit alpha, at 999,456 to 1,000,574
_RS25220
RR42_RS25225: RR42_RS25225 - NAD(P) transhydrogenase, at 1,000,585 to 1,000,908
_RS25225
RR42_RS25230: RR42_RS25230 - NAD synthetase, at 1,000,908 to 1,002,377
_RS25230
Position (kb) 999
1000
1001 Strain fitness (log2 ratio) -2
-1
0
1
2 at 998.473 kb on + strand at 998.473 kb on + strand at 998.474 kb on - strand at 998.537 kb on - strand at 998.537 kb on - strand at 998.537 kb on - strand at 998.537 kb on - strand at 998.537 kb on - strand at 998.632 kb on - strand at 998.665 kb on - strand at 998.665 kb on - strand at 998.668 kb on - strand at 998.668 kb on - strand at 998.668 kb on - strand at 998.734 kb on + strand at 998.756 kb on - strand, within RR42_RS25215 at 998.756 kb on - strand, within RR42_RS25215 at 998.786 kb on + strand, within RR42_RS25215 at 998.787 kb on - strand, within RR42_RS25215 at 998.956 kb on + strand, within RR42_RS25215 at 998.956 kb on + strand, within RR42_RS25215 at 998.957 kb on - strand, within RR42_RS25215 at 998.957 kb on - strand, within RR42_RS25215 at 999.299 kb on + strand at 999.437 kb on + strand at 999.531 kb on + strand at 999.765 kb on - strand, within RR42_RS25220 at 999.765 kb on - strand, within RR42_RS25220 at 999.838 kb on + strand, within RR42_RS25220 at 999.838 kb on + strand, within RR42_RS25220 at 999.839 kb on - strand, within RR42_RS25220 at 999.839 kb on - strand, within RR42_RS25220 at 999.839 kb on - strand, within RR42_RS25220 at 999.839 kb on - strand, within RR42_RS25220 at 999.897 kb on + strand, within RR42_RS25220 at 999.898 kb on - strand, within RR42_RS25220 at 1000.597 kb on - strand at 1000.639 kb on + strand, within RR42_RS25225 at 1000.640 kb on - strand, within RR42_RS25225 at 1000.881 kb on + strand at 1000.882 kb on - strand at 1000.944 kb on + strand at 1000.944 kb on + strand at 1001.185 kb on + strand, within RR42_RS25230 at 1001.428 kb on - strand, within RR42_RS25230
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 998,473 + -0.0 998,473 + -0.6 998,474 - +0.1 998,537 - +0.6 998,537 - +1.9 998,537 - -2.6 998,537 - +0.1 998,537 - +0.5 998,632 - -1.0 998,665 - +0.1 998,665 - -0.4 998,668 - -1.2 998,668 - -0.4 998,668 - +0.6 998,734 + +0.5 998,756 - RR42_RS25215 0.12 +0.4 998,756 - RR42_RS25215 0.12 -0.4 998,786 + RR42_RS25215 0.17 +1.2 998,787 - RR42_RS25215 0.17 -0.5 998,956 + RR42_RS25215 0.45 -0.2 998,956 + RR42_RS25215 0.45 -1.0 998,957 - RR42_RS25215 0.45 -0.0 998,957 - RR42_RS25215 0.45 -1.6 999,299 + +0.4 999,437 + -0.3 999,531 + +1.8 999,765 - RR42_RS25220 0.28 -0.6 999,765 - RR42_RS25220 0.28 +0.9 999,838 + RR42_RS25220 0.34 -0.7 999,838 + RR42_RS25220 0.34 -0.0 999,839 - RR42_RS25220 0.34 +0.0 999,839 - RR42_RS25220 0.34 -0.5 999,839 - RR42_RS25220 0.34 -0.2 999,839 - RR42_RS25220 0.34 -0.4 999,897 + RR42_RS25220 0.39 +0.4 999,898 - RR42_RS25220 0.39 -0.3 1,000,597 - +0.7 1,000,639 + RR42_RS25225 0.17 -0.1 1,000,640 - RR42_RS25225 0.17 -0.7 1,000,881 + -0.5 1,000,882 - -0.4 1,000,944 + +0.5 1,000,944 + +0.1 1,001,185 + RR42_RS25230 0.19 -1.1 1,001,428 - RR42_RS25230 0.35 +0.0
Or see this region's nucleotide sequence