Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23755

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23750 and RR42_RS23755 are separated by 170 nucleotidesRR42_RS23755 and RR42_RS23760 are separated by 140 nucleotidesRR42_RS23760 and RR42_RS23765 are separated by 4 nucleotidesRR42_RS23765 and RR42_RS23770 are separated by 104 nucleotides RR42_RS23750: RR42_RS23750 - aldehyde dehydrogenase, at 652,430 to 654,112 _RS23750 RR42_RS23755: RR42_RS23755 - phenylacetate--CoA ligase, at 654,283 to 655,608 _RS23755 RR42_RS23760: RR42_RS23760 - tRNA-Asn, at 655,749 to 655,824 _RS23760 RR42_RS23765: RR42_RS23765 - tRNA-Gly, at 655,829 to 655,904 _RS23765 RR42_RS23770: RR42_RS23770 - hypothetical protein, at 656,009 to 656,920 _RS23770 Position (kb) 654 655 656Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 653.348 kb on + strand, within RR42_RS23750at 653.349 kb on - strand, within RR42_RS23750at 653.349 kb on - strand, within RR42_RS23750at 653.349 kb on - strand, within RR42_RS23750at 653.477 kb on + strand, within RR42_RS23750at 653.477 kb on + strand, within RR42_RS23750at 653.477 kb on + strand, within RR42_RS23750at 653.477 kb on + strand, within RR42_RS23750at 653.477 kb on + strand, within RR42_RS23750at 653.477 kb on + strand, within RR42_RS23750at 653.478 kb on - strand, within RR42_RS23750at 653.478 kb on - strand, within RR42_RS23750at 653.880 kb on - strand, within RR42_RS23750at 653.881 kb on + strand, within RR42_RS23750at 653.881 kb on + strand, within RR42_RS23750at 653.881 kb on + strand, within RR42_RS23750at 654.110 kb on + strandat 654.110 kb on + strandat 654.111 kb on - strandat 654.142 kb on + strandat 654.143 kb on - strandat 654.143 kb on - strandat 654.330 kb on - strandat 654.394 kb on + strandat 654.394 kb on + strandat 654.394 kb on + strandat 654.394 kb on + strandat 654.394 kb on + strandat 654.395 kb on - strandat 654.395 kb on - strandat 654.395 kb on - strandat 654.395 kb on - strandat 654.395 kb on - strandat 654.395 kb on - strandat 654.395 kb on - strandat 654.490 kb on - strand, within RR42_RS23755at 654.490 kb on - strand, within RR42_RS23755at 654.517 kb on + strand, within RR42_RS23755at 654.518 kb on - strand, within RR42_RS23755at 654.803 kb on + strand, within RR42_RS23755at 654.804 kb on - strand, within RR42_RS23755at 654.804 kb on - strand, within RR42_RS23755at 654.804 kb on - strand, within RR42_RS23755at 654.853 kb on + strand, within RR42_RS23755at 654.853 kb on + strand, within RR42_RS23755at 654.853 kb on + strand, within RR42_RS23755at 654.853 kb on + strand, within RR42_RS23755at 654.854 kb on - strand, within RR42_RS23755at 654.854 kb on - strand, within RR42_RS23755at 654.861 kb on + strand, within RR42_RS23755at 654.862 kb on - strand, within RR42_RS23755at 655.003 kb on + strand, within RR42_RS23755at 655.004 kb on - strand, within RR42_RS23755at 655.004 kb on - strand, within RR42_RS23755at 655.004 kb on - strand, within RR42_RS23755at 655.158 kb on + strand, within RR42_RS23755at 655.159 kb on - strand, within RR42_RS23755at 655.363 kb on + strand, within RR42_RS23755at 655.363 kb on + strand, within RR42_RS23755at 655.364 kb on - strand, within RR42_RS23755at 655.392 kb on + strand, within RR42_RS23755at 655.756 kb on + strandat 655.768 kb on + strand, within RR42_RS23760at 655.784 kb on + strand, within RR42_RS23760at 655.784 kb on + strand, within RR42_RS23760at 655.837 kb on - strand, within RR42_RS23765at 655.837 kb on - strand, within RR42_RS23765at 655.849 kb on - strand, within RR42_RS23765at 655.849 kb on - strand, within RR42_RS23765at 655.925 kb on + strandat 655.925 kb on + strandat 655.926 kb on - strandat 655.931 kb on - strandat 656.010 kb on + strandat 656.011 kb on - strandat 656.017 kb on - strandat 656.017 kb on - strandat 656.058 kb on + strandat 656.058 kb on + strandat 656.058 kb on + strandat 656.058 kb on + strandat 656.058 kb on + strandat 656.071 kb on + strandat 656.083 kb on + strandat 656.083 kb on + strandat 656.083 kb on + strandat 656.083 kb on + strandat 656.084 kb on - strandat 656.084 kb on - strandat 656.149 kb on + strand, within RR42_RS23770at 656.149 kb on + strand, within RR42_RS23770at 656.177 kb on + strand, within RR42_RS23770at 656.177 kb on + strand, within RR42_RS23770at 656.178 kb on - strand, within RR42_RS23770at 656.178 kb on - strand, within RR42_RS23770at 656.178 kb on - strand, within RR42_RS23770at 656.188 kb on + strand, within RR42_RS23770at 656.189 kb on - strand, within RR42_RS23770at 656.189 kb on - strand, within RR42_RS23770at 656.189 kb on - strand, within RR42_RS23770at 656.328 kb on + strand, within RR42_RS23770at 656.330 kb on + strand, within RR42_RS23770at 656.331 kb on - strand, within RR42_RS23770at 656.341 kb on - strand, within RR42_RS23770at 656.425 kb on + strand, within RR42_RS23770at 656.425 kb on + strand, within RR42_RS23770at 656.426 kb on - strand, within RR42_RS23770at 656.426 kb on - strand, within RR42_RS23770at 656.426 kb on - strand, within RR42_RS23770at 656.444 kb on + strand, within RR42_RS23770at 656.444 kb on + strand, within RR42_RS23770at 656.445 kb on - strand, within RR42_RS23770at 656.497 kb on - strand, within RR42_RS23770at 656.530 kb on + strand, within RR42_RS23770at 656.531 kb on - strand, within RR42_RS23770at 656.531 kb on - strand, within RR42_RS23770at 656.531 kb on - strand, within RR42_RS23770at 656.573 kb on + strand, within RR42_RS23770at 656.574 kb on - strand, within RR42_RS23770at 656.583 kb on - strand, within RR42_RS23770

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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653,348 + RR42_RS23750 0.55 -0.1
653,349 - RR42_RS23750 0.55 -0.2
653,349 - RR42_RS23750 0.55 +0.5
653,349 - RR42_RS23750 0.55 -0.1
653,477 + RR42_RS23750 0.62 +0.9
653,477 + RR42_RS23750 0.62 +0.5
653,477 + RR42_RS23750 0.62 -1.1
653,477 + RR42_RS23750 0.62 -0.4
653,477 + RR42_RS23750 0.62 +0.4
653,477 + RR42_RS23750 0.62 +0.2
653,478 - RR42_RS23750 0.62 +0.3
653,478 - RR42_RS23750 0.62 +0.4
653,880 - RR42_RS23750 0.86 +0.2
653,881 + RR42_RS23750 0.86 +0.1
653,881 + RR42_RS23750 0.86 +0.2
653,881 + RR42_RS23750 0.86 +0.8
654,110 + +0.1
654,110 + +0.5
654,111 - -1.0
654,142 + -0.4
654,143 - +0.0
654,143 - +0.1
654,330 - -0.3
654,394 + -0.4
654,394 + -1.6
654,394 + -1.2
654,394 + -0.7
654,394 + +1.7
654,395 - +0.3
654,395 - -0.1
654,395 - -0.4
654,395 - +0.1
654,395 - +0.1
654,395 - +1.3
654,395 - -0.0
654,490 - RR42_RS23755 0.16 -0.5
654,490 - RR42_RS23755 0.16 -0.2
654,517 + RR42_RS23755 0.18 +0.1
654,518 - RR42_RS23755 0.18 -0.9
654,803 + RR42_RS23755 0.39 -1.0
654,804 - RR42_RS23755 0.39 +0.1
654,804 - RR42_RS23755 0.39 -0.2
654,804 - RR42_RS23755 0.39 +0.9
654,853 + RR42_RS23755 0.43 -0.0
654,853 + RR42_RS23755 0.43 -0.2
654,853 + RR42_RS23755 0.43 -0.0
654,853 + RR42_RS23755 0.43 -0.4
654,854 - RR42_RS23755 0.43 +1.0
654,854 - RR42_RS23755 0.43 +0.3
654,861 + RR42_RS23755 0.44 +0.2
654,862 - RR42_RS23755 0.44 +0.6
655,003 + RR42_RS23755 0.54 -0.1
655,004 - RR42_RS23755 0.54 -0.1
655,004 - RR42_RS23755 0.54 -0.8
655,004 - RR42_RS23755 0.54 +0.4
655,158 + RR42_RS23755 0.66 +0.0
655,159 - RR42_RS23755 0.66 +0.5
655,363 + RR42_RS23755 0.81 +0.0
655,363 + RR42_RS23755 0.81 -0.9
655,364 - RR42_RS23755 0.82 +1.0
655,392 + RR42_RS23755 0.84 +0.0
655,756 + +0.3
655,768 + RR42_RS23760 0.25 -0.4
655,784 + RR42_RS23760 0.46 -2.3
655,784 + RR42_RS23760 0.46 -0.3
655,837 - RR42_RS23765 0.11 -0.5
655,837 - RR42_RS23765 0.11 -0.6
655,849 - RR42_RS23765 0.26 -0.1
655,849 - RR42_RS23765 0.26 +0.4
655,925 + +0.0
655,925 + -0.2
655,926 - -0.2
655,931 - -0.6
656,010 + -0.6
656,011 - -0.3
656,017 - +0.6
656,017 - -0.7
656,058 + -2.7
656,058 + -1.2
656,058 + +0.3
656,058 + +2.2
656,058 + -0.4
656,071 + -0.1
656,083 + -1.2
656,083 + +0.5
656,083 + -2.8
656,083 + +0.3
656,084 - +1.2
656,084 - -0.1
656,149 + RR42_RS23770 0.15 -0.5
656,149 + RR42_RS23770 0.15 -0.7
656,177 + RR42_RS23770 0.18 -0.2
656,177 + RR42_RS23770 0.18 -1.8
656,178 - RR42_RS23770 0.19 +0.0
656,178 - RR42_RS23770 0.19 +0.7
656,178 - RR42_RS23770 0.19 -0.6
656,188 + RR42_RS23770 0.20 +0.0
656,189 - RR42_RS23770 0.20 -0.5
656,189 - RR42_RS23770 0.20 +0.5
656,189 - RR42_RS23770 0.20 +0.3
656,328 + RR42_RS23770 0.35 +0.7
656,330 + RR42_RS23770 0.35 +0.0
656,331 - RR42_RS23770 0.35 +1.0
656,341 - RR42_RS23770 0.36 -0.5
656,425 + RR42_RS23770 0.46 +0.4
656,425 + RR42_RS23770 0.46 -0.3
656,426 - RR42_RS23770 0.46 -0.6
656,426 - RR42_RS23770 0.46 -1.1
656,426 - RR42_RS23770 0.46 +0.0
656,444 + RR42_RS23770 0.48 +0.8
656,444 + RR42_RS23770 0.48 +0.9
656,445 - RR42_RS23770 0.48 -0.0
656,497 - RR42_RS23770 0.54 -0.0
656,530 + RR42_RS23770 0.57 -0.3
656,531 - RR42_RS23770 0.57 +0.5
656,531 - RR42_RS23770 0.57 -0.3
656,531 - RR42_RS23770 0.57 -0.7
656,573 + RR42_RS23770 0.62 -0.6
656,574 - RR42_RS23770 0.62 +1.5
656,583 - RR42_RS23770 0.63 +0.3

Or see this region's nucleotide sequence