Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22690 and RR42_RS22695 are separated by 316 nucleotides RR42_RS22695 and RR42_RS22700 are separated by 193 nucleotides RR42_RS22700 and RR42_RS22705 are separated by 506 nucleotides RR42_RS22705 and RR42_RS22710 are separated by 86 nucleotides
RR42_RS22690: RR42_RS22690 - CoA-transferase, at 425,401 to 426,582
_RS22690
RR42_RS22695: RR42_RS22695 - chemotaxis protein, at 426,899 to 427,324
_RS22695
RR42_RS22700: RR42_RS22700 - phasin, at 427,518 to 428,075
_RS22700
RR42_RS22705: RR42_RS22705 - oxidoreductase, at 428,582 to 428,905
_RS22705
RR42_RS22710: RR42_RS22710 - short-chain dehydrogenase, at 428,992 to 429,741
_RS22710
Position (kb) 427
428
429 Strain fitness (log2 ratio) -2
-1
0
1 at 426.532 kb on + strand at 426.533 kb on - strand at 426.653 kb on + strand at 426.653 kb on + strand at 426.654 kb on - strand at 426.654 kb on - strand at 426.792 kb on - strand at 426.950 kb on + strand, within RR42_RS22695 at 426.951 kb on - strand, within RR42_RS22695 at 426.970 kb on + strand, within RR42_RS22695 at 426.971 kb on - strand, within RR42_RS22695 at 427.204 kb on + strand, within RR42_RS22695 at 427.204 kb on + strand, within RR42_RS22695 at 427.322 kb on + strand at 427.383 kb on + strand at 427.639 kb on + strand, within RR42_RS22700 at 427.640 kb on - strand, within RR42_RS22700 at 427.759 kb on + strand, within RR42_RS22700 at 427.813 kb on + strand, within RR42_RS22700 at 427.813 kb on + strand, within RR42_RS22700 at 427.813 kb on + strand, within RR42_RS22700 at 427.814 kb on - strand, within RR42_RS22700 at 427.828 kb on + strand, within RR42_RS22700 at 427.865 kb on + strand, within RR42_RS22700 at 427.866 kb on - strand, within RR42_RS22700 at 427.866 kb on - strand, within RR42_RS22700 at 428.000 kb on + strand, within RR42_RS22700 at 428.001 kb on - strand, within RR42_RS22700 at 428.001 kb on - strand, within RR42_RS22700 at 428.091 kb on + strand at 428.213 kb on + strand at 428.223 kb on + strand at 428.263 kb on + strand at 428.264 kb on - strand at 428.330 kb on + strand at 428.330 kb on + strand at 428.331 kb on - strand at 428.410 kb on - strand at 428.477 kb on - strand at 428.583 kb on + strand at 428.583 kb on + strand at 428.670 kb on + strand, within RR42_RS22705 at 428.695 kb on + strand, within RR42_RS22705 at 428.712 kb on + strand, within RR42_RS22705 at 428.712 kb on + strand, within RR42_RS22705 at 428.713 kb on - strand, within RR42_RS22705 at 428.752 kb on + strand, within RR42_RS22705 at 428.781 kb on + strand, within RR42_RS22705 at 428.782 kb on - strand, within RR42_RS22705 at 428.782 kb on - strand, within RR42_RS22705 at 428.782 kb on - strand, within RR42_RS22705 at 428.782 kb on - strand, within RR42_RS22705 at 428.885 kb on - strand at 428.940 kb on + strand at 428.940 kb on + strand at 428.940 kb on + strand at 428.941 kb on - strand at 428.941 kb on - strand at 428.941 kb on - strand at 428.949 kb on + strand at 428.950 kb on - strand at 428.966 kb on + strand at 428.967 kb on - strand at 428.967 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 426,532 + -0.7 426,533 - -0.4 426,653 + -0.3 426,653 + -0.3 426,654 - -1.5 426,654 - -0.4 426,792 - -1.7 426,950 + RR42_RS22695 0.12 +0.7 426,951 - RR42_RS22695 0.12 -1.6 426,970 + RR42_RS22695 0.17 +0.4 426,971 - RR42_RS22695 0.17 -0.3 427,204 + RR42_RS22695 0.72 -0.3 427,204 + RR42_RS22695 0.72 +0.8 427,322 + +0.4 427,383 + -0.2 427,639 + RR42_RS22700 0.22 +0.1 427,640 - RR42_RS22700 0.22 +0.1 427,759 + RR42_RS22700 0.43 -1.1 427,813 + RR42_RS22700 0.53 +1.3 427,813 + RR42_RS22700 0.53 +0.4 427,813 + RR42_RS22700 0.53 +0.3 427,814 - RR42_RS22700 0.53 +0.4 427,828 + RR42_RS22700 0.56 +0.9 427,865 + RR42_RS22700 0.62 +0.5 427,866 - RR42_RS22700 0.62 +1.2 427,866 - RR42_RS22700 0.62 +0.6 428,000 + RR42_RS22700 0.86 -0.1 428,001 - RR42_RS22700 0.87 +0.8 428,001 - RR42_RS22700 0.87 +0.4 428,091 + -1.0 428,213 + +0.2 428,223 + +0.3 428,263 + +0.7 428,264 - -0.7 428,330 + +0.6 428,330 + +1.7 428,331 - -0.1 428,410 - -0.1 428,477 - +1.0 428,583 + +0.1 428,583 + -0.2 428,670 + RR42_RS22705 0.27 -0.1 428,695 + RR42_RS22705 0.35 +0.1 428,712 + RR42_RS22705 0.40 -0.3 428,712 + RR42_RS22705 0.40 -1.9 428,713 - RR42_RS22705 0.40 -0.4 428,752 + RR42_RS22705 0.52 -0.9 428,781 + RR42_RS22705 0.61 -0.3 428,782 - RR42_RS22705 0.62 -0.4 428,782 - RR42_RS22705 0.62 +1.1 428,782 - RR42_RS22705 0.62 -0.9 428,782 - RR42_RS22705 0.62 -0.4 428,885 - -0.4 428,940 + +0.9 428,940 + -0.7 428,940 + -0.5 428,941 - +0.1 428,941 - -1.1 428,941 - +0.6 428,949 + -0.2 428,950 - +0.3 428,966 + +0.5 428,967 - +0.1 428,967 - -0.1
Or see this region's nucleotide sequence