Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22320 and RR42_RS22325 overlap by 4 nucleotides RR42_RS22325 and RR42_RS22330 are separated by 31 nucleotides RR42_RS22330 and RR42_RS22335 are separated by 414 nucleotides
RR42_RS22320: RR42_RS22320 - MFS transporter, at 347,867 to 349,171
_RS22320
RR42_RS22325: RR42_RS22325 - hypothetical protein, at 349,168 to 350,265
_RS22325
RR42_RS22330: RR42_RS22330 - ester cyclase, at 350,297 to 350,800
_RS22330
RR42_RS22335: RR42_RS22335 - hemagglutinin, at 351,215 to 352,492
_RS22335
Position (kb) 349
350
351 Strain fitness (log2 ratio) -1
0
1
2 at 348.354 kb on + strand, within RR42_RS22320 at 348.354 kb on + strand, within RR42_RS22320 at 348.354 kb on + strand, within RR42_RS22320 at 348.355 kb on - strand, within RR42_RS22320 at 348.355 kb on - strand, within RR42_RS22320 at 348.355 kb on - strand, within RR42_RS22320 at 348.685 kb on - strand, within RR42_RS22320 at 348.732 kb on + strand, within RR42_RS22320 at 348.750 kb on + strand, within RR42_RS22320 at 348.750 kb on + strand, within RR42_RS22320 at 348.750 kb on + strand, within RR42_RS22320 at 348.751 kb on - strand, within RR42_RS22320 at 348.808 kb on - strand, within RR42_RS22320 at 348.808 kb on - strand, within RR42_RS22320 at 348.939 kb on + strand, within RR42_RS22320 at 348.940 kb on - strand, within RR42_RS22320 at 349.044 kb on + strand at 349.045 kb on - strand at 349.056 kb on + strand at 349.056 kb on + strand at 349.056 kb on + strand at 349.056 kb on + strand at 349.056 kb on + strand at 349.056 kb on + strand at 349.057 kb on - strand at 349.057 kb on - strand at 349.068 kb on - strand at 349.355 kb on + strand, within RR42_RS22325 at 349.355 kb on + strand, within RR42_RS22325 at 349.355 kb on + strand, within RR42_RS22325 at 349.355 kb on + strand, within RR42_RS22325 at 349.356 kb on - strand, within RR42_RS22325 at 349.380 kb on + strand, within RR42_RS22325 at 349.465 kb on - strand, within RR42_RS22325 at 349.517 kb on + strand, within RR42_RS22325 at 349.647 kb on - strand, within RR42_RS22325 at 349.787 kb on + strand, within RR42_RS22325 at 349.787 kb on + strand, within RR42_RS22325 at 349.788 kb on - strand, within RR42_RS22325 at 349.788 kb on - strand, within RR42_RS22325 at 349.788 kb on - strand, within RR42_RS22325 at 349.797 kb on - strand, within RR42_RS22325 at 349.878 kb on + strand, within RR42_RS22325 at 349.879 kb on + strand, within RR42_RS22325 at 349.914 kb on - strand, within RR42_RS22325 at 350.051 kb on + strand, within RR42_RS22325 at 350.051 kb on + strand, within RR42_RS22325 at 350.051 kb on + strand, within RR42_RS22325 at 350.069 kb on + strand, within RR42_RS22325 at 350.070 kb on - strand, within RR42_RS22325 at 350.299 kb on - strand at 350.622 kb on + strand, within RR42_RS22330 at 350.622 kb on + strand, within RR42_RS22330 at 350.623 kb on - strand, within RR42_RS22330 at 350.623 kb on - strand, within RR42_RS22330 at 350.679 kb on + strand, within RR42_RS22330 at 350.679 kb on + strand, within RR42_RS22330 at 350.871 kb on + strand at 350.872 kb on - strand at 351.001 kb on - strand at 351.005 kb on - strand at 351.064 kb on + strand at 351.155 kb on + strand at 351.156 kb on - strand at 351.159 kb on + strand at 351.159 kb on + strand at 351.230 kb on + strand at 351.241 kb on + strand at 351.242 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 348,354 + RR42_RS22320 0.37 +0.3 348,354 + RR42_RS22320 0.37 -0.0 348,354 + RR42_RS22320 0.37 -1.1 348,355 - RR42_RS22320 0.37 -0.1 348,355 - RR42_RS22320 0.37 -0.1 348,355 - RR42_RS22320 0.37 +0.6 348,685 - RR42_RS22320 0.63 -1.0 348,732 + RR42_RS22320 0.66 -0.2 348,750 + RR42_RS22320 0.68 +0.6 348,750 + RR42_RS22320 0.68 +1.6 348,750 + RR42_RS22320 0.68 -0.3 348,751 - RR42_RS22320 0.68 +0.2 348,808 - RR42_RS22320 0.72 -0.2 348,808 - RR42_RS22320 0.72 -0.6 348,939 + RR42_RS22320 0.82 +0.5 348,940 - RR42_RS22320 0.82 -0.2 349,044 + +0.3 349,045 - +0.4 349,056 + -0.4 349,056 + +0.2 349,056 + -0.9 349,056 + -0.2 349,056 + +0.0 349,056 + +0.3 349,057 - -0.0 349,057 - +1.0 349,068 - -0.2 349,355 + RR42_RS22325 0.17 +0.4 349,355 + RR42_RS22325 0.17 -1.2 349,355 + RR42_RS22325 0.17 -0.6 349,355 + RR42_RS22325 0.17 +0.6 349,356 - RR42_RS22325 0.17 +0.3 349,380 + RR42_RS22325 0.19 +0.2 349,465 - RR42_RS22325 0.27 +0.2 349,517 + RR42_RS22325 0.32 +0.1 349,647 - RR42_RS22325 0.44 +0.1 349,787 + RR42_RS22325 0.56 +0.4 349,787 + RR42_RS22325 0.56 -0.5 349,788 - RR42_RS22325 0.56 -0.0 349,788 - RR42_RS22325 0.56 -0.4 349,788 - RR42_RS22325 0.56 -0.3 349,797 - RR42_RS22325 0.57 +0.5 349,878 + RR42_RS22325 0.65 +2.0 349,879 + RR42_RS22325 0.65 -0.1 349,914 - RR42_RS22325 0.68 -0.5 350,051 + RR42_RS22325 0.80 +0.4 350,051 + RR42_RS22325 0.80 -0.1 350,051 + RR42_RS22325 0.80 -0.7 350,069 + RR42_RS22325 0.82 +0.5 350,070 - RR42_RS22325 0.82 -0.7 350,299 - +0.2 350,622 + RR42_RS22330 0.64 -0.9 350,622 + RR42_RS22330 0.64 -0.6 350,623 - RR42_RS22330 0.65 +1.0 350,623 - RR42_RS22330 0.65 -0.9 350,679 + RR42_RS22330 0.76 +0.4 350,679 + RR42_RS22330 0.76 -0.2 350,871 + -0.3 350,872 - +0.1 351,001 - -0.1 351,005 - -0.1 351,064 + -0.1 351,155 + -0.4 351,156 - +0.5 351,159 + +0.2 351,159 + +0.2 351,230 + -0.1 351,241 + +1.1 351,242 - -0.1
Or see this region's nucleotide sequence