Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS17010 and RR42_RS17015 are separated by 71 nucleotides RR42_RS17015 and RR42_RS17020 are separated by 32 nucleotides RR42_RS17020 and RR42_RS17025 are separated by 168 nucleotides
RR42_RS17010: RR42_RS17010 - L-aspartate oxidase, at 3,680,104 to 3,681,702
_RS17010
RR42_RS17015: RR42_RS17015 - nicotinate-nucleotide pyrophosphorylase, at 3,681,774 to 3,682,643
_RS17015
RR42_RS17020: RR42_RS17020 - quinolinate synthetase, at 3,682,676 to 3,683,827
_RS17020
RR42_RS17025: RR42_RS17025 - aminotransferase, at 3,683,996 to 3,685,186
_RS17025
Position (kb)
3682
3683
3684 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3681.701 kb on - strand at 3681.749 kb on - strand at 3681.776 kb on - strand at 3681.797 kb on - strand at 3681.797 kb on - strand at 3682.177 kb on + strand, within RR42_RS17015 at 3682.177 kb on + strand, within RR42_RS17015 at 3682.178 kb on - strand, within RR42_RS17015 at 3682.178 kb on - strand, within RR42_RS17015 at 3682.178 kb on - strand, within RR42_RS17015 at 3682.609 kb on + strand at 3682.609 kb on + strand at 3682.610 kb on - strand at 3682.655 kb on + strand at 3682.828 kb on + strand, within RR42_RS17020 at 3682.829 kb on - strand, within RR42_RS17020 at 3683.028 kb on - strand, within RR42_RS17020 at 3683.028 kb on - strand, within RR42_RS17020 at 3683.225 kb on - strand, within RR42_RS17020 at 3683.226 kb on + strand, within RR42_RS17020 at 3683.362 kb on - strand, within RR42_RS17020 at 3683.362 kb on - strand, within RR42_RS17020 at 3683.362 kb on - strand, within RR42_RS17020 at 3683.362 kb on - strand, within RR42_RS17020 at 3683.631 kb on + strand, within RR42_RS17020 at 3683.631 kb on + strand, within RR42_RS17020 at 3683.632 kb on - strand, within RR42_RS17020 at 3683.632 kb on - strand, within RR42_RS17020 at 3683.632 kb on - strand, within RR42_RS17020 at 3683.635 kb on - strand, within RR42_RS17020 at 3683.635 kb on - strand, within RR42_RS17020 at 3683.635 kb on - strand, within RR42_RS17020 at 3683.897 kb on + strand at 3683.910 kb on + strand at 3683.956 kb on - strand at 3683.956 kb on - strand at 3683.956 kb on - strand at 3683.963 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 3,681,701 - +0.8 3,681,749 - +0.1 3,681,776 - -0.1 3,681,797 - -1.6 3,681,797 - +0.0 3,682,177 + RR42_RS17015 0.46 -0.3 3,682,177 + RR42_RS17015 0.46 +0.1 3,682,178 - RR42_RS17015 0.46 -2.1 3,682,178 - RR42_RS17015 0.46 -0.3 3,682,178 - RR42_RS17015 0.46 +0.7 3,682,609 + +0.3 3,682,609 + -1.1 3,682,610 - +0.9 3,682,655 + +0.7 3,682,828 + RR42_RS17020 0.13 -1.0 3,682,829 - RR42_RS17020 0.13 -0.6 3,683,028 - RR42_RS17020 0.31 -0.9 3,683,028 - RR42_RS17020 0.31 -1.1 3,683,225 - RR42_RS17020 0.48 -1.8 3,683,226 + RR42_RS17020 0.48 +0.0 3,683,362 - RR42_RS17020 0.60 -1.1 3,683,362 - RR42_RS17020 0.60 -1.8 3,683,362 - RR42_RS17020 0.60 -1.0 3,683,362 - RR42_RS17020 0.60 -1.1 3,683,631 + RR42_RS17020 0.83 -1.3 3,683,631 + RR42_RS17020 0.83 +0.6 3,683,632 - RR42_RS17020 0.83 -0.3 3,683,632 - RR42_RS17020 0.83 +0.2 3,683,632 - RR42_RS17020 0.83 -2.3 3,683,635 - RR42_RS17020 0.83 -0.3 3,683,635 - RR42_RS17020 0.83 +0.5 3,683,635 - RR42_RS17020 0.83 -0.5 3,683,897 + -0.3 3,683,910 + +0.7 3,683,956 - +2.0 3,683,956 - -0.5 3,683,956 - -0.3 3,683,963 - +0.2
Or see this region's nucleotide sequence