Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS06895 and RR42_RS06900 overlap by 4 nucleotides RR42_RS06900 and RR42_RS06905 are separated by 14 nucleotides RR42_RS06905 and RR42_RS06910 overlap by 4 nucleotides RR42_RS06910 and RR42_RS06915 are separated by 156 nucleotides
RR42_RS06895: RR42_RS06895 - hypothetical protein, at 1,485,460 to 1,485,849
_RS06895
RR42_RS06900: RR42_RS06900 - hypothetical protein, at 1,485,846 to 1,486,346
_RS06900
RR42_RS06905: RR42_RS06905 - hypothetical protein, at 1,486,361 to 1,486,654
_RS06905
RR42_RS06910: RR42_RS06910 - hypothetical protein, at 1,486,651 to 1,486,926
_RS06910
RR42_RS06915: RR42_RS06915 - hypothetical protein, at 1,487,083 to 1,488,597
_RS06915
Position (kb) 1486
1487 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1485.692 kb on - strand, within RR42_RS06895 at 1485.725 kb on - strand, within RR42_RS06895 at 1485.829 kb on - strand at 1485.997 kb on - strand, within RR42_RS06900 at 1485.997 kb on - strand, within RR42_RS06900 at 1486.024 kb on - strand, within RR42_RS06900 at 1486.024 kb on - strand, within RR42_RS06900 at 1486.179 kb on - strand, within RR42_RS06900 at 1486.233 kb on - strand, within RR42_RS06900 at 1486.479 kb on - strand, within RR42_RS06905 at 1486.744 kb on - strand, within RR42_RS06910 at 1486.744 kb on - strand, within RR42_RS06910 at 1486.835 kb on - strand, within RR42_RS06910 at 1486.835 kb on - strand, within RR42_RS06910 at 1486.866 kb on - strand, within RR42_RS06910 at 1486.866 kb on - strand, within RR42_RS06910 at 1486.866 kb on - strand, within RR42_RS06910 at 1486.866 kb on - strand, within RR42_RS06910 at 1487.141 kb on - strand at 1487.318 kb on - strand, within RR42_RS06915 at 1487.318 kb on - strand, within RR42_RS06915 at 1487.472 kb on - strand, within RR42_RS06915 at 1487.606 kb on - strand, within RR42_RS06915 at 1487.606 kb on - strand, within RR42_RS06915 at 1487.606 kb on - strand, within RR42_RS06915 at 1487.606 kb on - strand, within RR42_RS06915 at 1487.690 kb on - strand, within RR42_RS06915 at 1487.695 kb on - strand, within RR42_RS06915 at 1487.913 kb on - strand, within RR42_RS06915
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 1,485,692 - RR42_RS06895 0.59 -0.6 1,485,725 - RR42_RS06895 0.68 +0.3 1,485,829 - -0.0 1,485,997 - RR42_RS06900 0.30 +0.4 1,485,997 - RR42_RS06900 0.30 -0.4 1,486,024 - RR42_RS06900 0.36 +0.0 1,486,024 - RR42_RS06900 0.36 +0.6 1,486,179 - RR42_RS06900 0.66 -0.4 1,486,233 - RR42_RS06900 0.77 +0.0 1,486,479 - RR42_RS06905 0.40 +0.2 1,486,744 - RR42_RS06910 0.34 +0.6 1,486,744 - RR42_RS06910 0.34 +1.4 1,486,835 - RR42_RS06910 0.67 +0.9 1,486,835 - RR42_RS06910 0.67 +2.1 1,486,866 - RR42_RS06910 0.78 +0.9 1,486,866 - RR42_RS06910 0.78 -0.1 1,486,866 - RR42_RS06910 0.78 +0.1 1,486,866 - RR42_RS06910 0.78 +0.8 1,487,141 - +0.3 1,487,318 - RR42_RS06915 0.16 +0.8 1,487,318 - RR42_RS06915 0.16 +0.6 1,487,472 - RR42_RS06915 0.26 +0.2 1,487,606 - RR42_RS06915 0.35 -1.1 1,487,606 - RR42_RS06915 0.35 -0.9 1,487,606 - RR42_RS06915 0.35 +0.0 1,487,606 - RR42_RS06915 0.35 -2.6 1,487,690 - RR42_RS06915 0.40 +0.4 1,487,695 - RR42_RS06915 0.40 +0.4 1,487,913 - RR42_RS06915 0.55 +0.2
Or see this region's nucleotide sequence