Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06805

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS06800 and RR42_RS06805 are separated by 121 nucleotidesRR42_RS06805 and RR42_RS06810 are separated by 2 nucleotidesRR42_RS06810 and RR42_RS06815 are separated by 204 nucleotides RR42_RS06800: RR42_RS06800 - hypothetical protein, at 1,473,132 to 1,474,007 _RS06800 RR42_RS06805: RR42_RS06805 - hypothetical protein, at 1,474,129 to 1,474,362 _RS06805 RR42_RS06810: RR42_RS06810 - hypothetical protein, at 1,474,365 to 1,474,643 _RS06810 RR42_RS06815: RR42_RS06815 - hypothetical protein, at 1,474,848 to 1,475,423 _RS06815 Position (kb) 1474 1475Strain fitness (log2 ratio) -2 -1 0 1 2at 1473.172 kb on + strandat 1473.172 kb on + strandat 1473.172 kb on + strandat 1473.173 kb on - strandat 1473.267 kb on + strand, within RR42_RS06800at 1473.268 kb on - strand, within RR42_RS06800at 1473.268 kb on - strand, within RR42_RS06800at 1473.268 kb on - strand, within RR42_RS06800at 1473.268 kb on - strand, within RR42_RS06800at 1473.269 kb on + strand, within RR42_RS06800at 1473.269 kb on + strand, within RR42_RS06800at 1473.270 kb on - strand, within RR42_RS06800at 1473.270 kb on - strand, within RR42_RS06800at 1473.270 kb on - strand, within RR42_RS06800at 1473.270 kb on - strand, within RR42_RS06800at 1473.270 kb on - strand, within RR42_RS06800at 1473.321 kb on - strand, within RR42_RS06800at 1473.343 kb on + strand, within RR42_RS06800at 1473.367 kb on + strand, within RR42_RS06800at 1473.367 kb on + strand, within RR42_RS06800at 1473.368 kb on - strand, within RR42_RS06800at 1473.368 kb on - strand, within RR42_RS06800at 1473.399 kb on - strand, within RR42_RS06800at 1473.402 kb on - strand, within RR42_RS06800at 1473.405 kb on + strand, within RR42_RS06800at 1473.405 kb on + strand, within RR42_RS06800at 1473.405 kb on + strand, within RR42_RS06800at 1473.405 kb on + strand, within RR42_RS06800at 1473.405 kb on + strand, within RR42_RS06800at 1473.405 kb on + strand, within RR42_RS06800at 1473.406 kb on - strand, within RR42_RS06800at 1473.434 kb on + strand, within RR42_RS06800at 1473.441 kb on + strand, within RR42_RS06800at 1473.449 kb on + strand, within RR42_RS06800at 1473.489 kb on + strand, within RR42_RS06800at 1473.489 kb on + strand, within RR42_RS06800at 1473.489 kb on + strand, within RR42_RS06800at 1473.573 kb on + strand, within RR42_RS06800at 1473.574 kb on - strand, within RR42_RS06800at 1473.587 kb on + strand, within RR42_RS06800at 1473.611 kb on - strand, within RR42_RS06800at 1473.626 kb on + strand, within RR42_RS06800at 1473.626 kb on + strand, within RR42_RS06800at 1473.627 kb on - strand, within RR42_RS06800at 1473.660 kb on + strand, within RR42_RS06800at 1473.660 kb on + strand, within RR42_RS06800at 1473.660 kb on + strand, within RR42_RS06800at 1473.660 kb on + strand, within RR42_RS06800at 1473.661 kb on - strand, within RR42_RS06800at 1473.661 kb on - strand, within RR42_RS06800at 1473.667 kb on + strand, within RR42_RS06800at 1473.667 kb on + strand, within RR42_RS06800at 1473.667 kb on + strand, within RR42_RS06800at 1473.667 kb on + strand, within RR42_RS06800at 1473.667 kb on + strand, within RR42_RS06800at 1473.668 kb on - strand, within RR42_RS06800at 1473.668 kb on - strand, within RR42_RS06800at 1473.668 kb on - strand, within RR42_RS06800at 1473.682 kb on + strand, within RR42_RS06800at 1473.798 kb on + strand, within RR42_RS06800at 1473.798 kb on + strand, within RR42_RS06800at 1473.798 kb on + strand, within RR42_RS06800at 1473.798 kb on + strand, within RR42_RS06800at 1473.799 kb on - strand, within RR42_RS06800at 1473.799 kb on - strand, within RR42_RS06800at 1473.799 kb on - strand, within RR42_RS06800at 1473.827 kb on - strand, within RR42_RS06800at 1473.834 kb on - strand, within RR42_RS06800at 1473.834 kb on - strand, within RR42_RS06800at 1473.863 kb on + strand, within RR42_RS06800at 1474.026 kb on + strandat 1474.026 kb on + strandat 1474.027 kb on - strandat 1474.027 kb on - strandat 1474.029 kb on + strandat 1474.029 kb on + strandat 1474.029 kb on + strandat 1474.029 kb on + strandat 1474.030 kb on - strandat 1474.121 kb on + strandat 1474.122 kb on - strandat 1474.122 kb on - strandat 1474.128 kb on + strandat 1474.128 kb on + strandat 1474.202 kb on - strand, within RR42_RS06805at 1474.213 kb on + strand, within RR42_RS06805at 1474.237 kb on - strand, within RR42_RS06805at 1474.361 kb on - strandat 1474.361 kb on - strandat 1474.401 kb on + strand, within RR42_RS06810at 1474.401 kb on + strand, within RR42_RS06810at 1474.402 kb on - strand, within RR42_RS06810at 1474.402 kb on - strand, within RR42_RS06810at 1474.518 kb on + strand, within RR42_RS06810at 1474.628 kb on - strandat 1474.628 kb on - strandat 1474.660 kb on - strandat 1474.724 kb on - strandat 1474.733 kb on + strandat 1474.908 kb on + strand, within RR42_RS06815at 1474.993 kb on - strand, within RR42_RS06815at 1475.063 kb on + strand, within RR42_RS06815at 1475.063 kb on + strand, within RR42_RS06815at 1475.063 kb on + strand, within RR42_RS06815at 1475.296 kb on + strand, within RR42_RS06815at 1475.296 kb on + strand, within RR42_RS06815at 1475.296 kb on + strand, within RR42_RS06815at 1475.296 kb on + strand, within RR42_RS06815at 1475.296 kb on + strand, within RR42_RS06815at 1475.322 kb on + strand, within RR42_RS06815

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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1,473,172 + +1.6
1,473,172 + +0.4
1,473,172 + +0.4
1,473,173 - -0.3
1,473,267 + RR42_RS06800 0.15 -0.1
1,473,268 - RR42_RS06800 0.16 -0.4
1,473,268 - RR42_RS06800 0.16 -0.1
1,473,268 - RR42_RS06800 0.16 +0.1
1,473,268 - RR42_RS06800 0.16 +0.2
1,473,269 + RR42_RS06800 0.16 -1.0
1,473,269 + RR42_RS06800 0.16 -1.8
1,473,270 - RR42_RS06800 0.16 +1.5
1,473,270 - RR42_RS06800 0.16 -0.2
1,473,270 - RR42_RS06800 0.16 -0.2
1,473,270 - RR42_RS06800 0.16 -0.7
1,473,270 - RR42_RS06800 0.16 +0.2
1,473,321 - RR42_RS06800 0.22 +0.7
1,473,343 + RR42_RS06800 0.24 -0.1
1,473,367 + RR42_RS06800 0.27 -1.4
1,473,367 + RR42_RS06800 0.27 -0.4
1,473,368 - RR42_RS06800 0.27 +0.7
1,473,368 - RR42_RS06800 0.27 +0.9
1,473,399 - RR42_RS06800 0.30 +0.0
1,473,402 - RR42_RS06800 0.31 +1.4
1,473,405 + RR42_RS06800 0.31 -0.0
1,473,405 + RR42_RS06800 0.31 +0.0
1,473,405 + RR42_RS06800 0.31 +0.3
1,473,405 + RR42_RS06800 0.31 -1.4
1,473,405 + RR42_RS06800 0.31 +0.1
1,473,405 + RR42_RS06800 0.31 +0.0
1,473,406 - RR42_RS06800 0.31 +0.1
1,473,434 + RR42_RS06800 0.34 +0.3
1,473,441 + RR42_RS06800 0.35 -2.6
1,473,449 + RR42_RS06800 0.36 -0.4
1,473,489 + RR42_RS06800 0.41 +1.3
1,473,489 + RR42_RS06800 0.41 -0.5
1,473,489 + RR42_RS06800 0.41 -1.1
1,473,573 + RR42_RS06800 0.50 +0.3
1,473,574 - RR42_RS06800 0.50 +2.5
1,473,587 + RR42_RS06800 0.52 -1.9
1,473,611 - RR42_RS06800 0.55 -1.6
1,473,626 + RR42_RS06800 0.56 +0.4
1,473,626 + RR42_RS06800 0.56 -0.2
1,473,627 - RR42_RS06800 0.57 -0.4
1,473,660 + RR42_RS06800 0.60 +0.9
1,473,660 + RR42_RS06800 0.60 +0.6
1,473,660 + RR42_RS06800 0.60 +0.3
1,473,660 + RR42_RS06800 0.60 +0.7
1,473,661 - RR42_RS06800 0.60 +0.3
1,473,661 - RR42_RS06800 0.60 -1.3
1,473,667 + RR42_RS06800 0.61 -1.4
1,473,667 + RR42_RS06800 0.61 +0.5
1,473,667 + RR42_RS06800 0.61 -0.1
1,473,667 + RR42_RS06800 0.61 +0.6
1,473,667 + RR42_RS06800 0.61 +0.7
1,473,668 - RR42_RS06800 0.61 +1.6
1,473,668 - RR42_RS06800 0.61 -0.2
1,473,668 - RR42_RS06800 0.61 -0.3
1,473,682 + RR42_RS06800 0.63 -1.1
1,473,798 + RR42_RS06800 0.76 -2.0
1,473,798 + RR42_RS06800 0.76 +0.4
1,473,798 + RR42_RS06800 0.76 -0.1
1,473,798 + RR42_RS06800 0.76 -0.1
1,473,799 - RR42_RS06800 0.76 +1.9
1,473,799 - RR42_RS06800 0.76 -0.3
1,473,799 - RR42_RS06800 0.76 +0.1
1,473,827 - RR42_RS06800 0.79 +0.1
1,473,834 - RR42_RS06800 0.80 +0.1
1,473,834 - RR42_RS06800 0.80 +1.1
1,473,863 + RR42_RS06800 0.83 +0.6
1,474,026 + +0.3
1,474,026 + +0.5
1,474,027 - +0.3
1,474,027 - +1.2
1,474,029 + -0.1
1,474,029 + +0.2
1,474,029 + -0.5
1,474,029 + +0.1
1,474,030 - -0.0
1,474,121 + -0.4
1,474,122 - -0.9
1,474,122 - -0.2
1,474,128 + +0.1
1,474,128 + +0.1
1,474,202 - RR42_RS06805 0.31 -0.9
1,474,213 + RR42_RS06805 0.36 -0.6
1,474,237 - RR42_RS06805 0.46 -1.9
1,474,361 - +0.2
1,474,361 - +1.3
1,474,401 + RR42_RS06810 0.13 -0.7
1,474,401 + RR42_RS06810 0.13 -0.4
1,474,402 - RR42_RS06810 0.13 +0.7
1,474,402 - RR42_RS06810 0.13 +0.5
1,474,518 + RR42_RS06810 0.55 +0.5
1,474,628 - -0.3
1,474,628 - -1.0
1,474,660 - +0.2
1,474,724 - +0.3
1,474,733 + -0.2
1,474,908 + RR42_RS06815 0.10 +0.4
1,474,993 - RR42_RS06815 0.25 -0.6
1,475,063 + RR42_RS06815 0.37 -0.3
1,475,063 + RR42_RS06815 0.37 +0.5
1,475,063 + RR42_RS06815 0.37 +0.3
1,475,296 + RR42_RS06815 0.78 -1.3
1,475,296 + RR42_RS06815 0.78 -0.2
1,475,296 + RR42_RS06815 0.78 -0.2
1,475,296 + RR42_RS06815 0.78 +0.0
1,475,296 + RR42_RS06815 0.78 -0.7
1,475,322 + RR42_RS06815 0.82 +0.1

Or see this region's nucleotide sequence