Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08740

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE
1,609,189	+		MMJJ_RS08730	0.82	-0.0
1,609,194	+		MMJJ_RS08730	0.82	+0.4
1,609,194	+		MMJJ_RS08730	0.82	+0.5
1,609,194	+		MMJJ_RS08730	0.82	-1.0
1,609,249	-		MMJJ_RS08730	0.88	-0.0
1,609,249	-		MMJJ_RS08730	0.88	+0.2
1,609,292	+				+2.3
1,609,299	-				-0.1
1,609,305	+				+0.4
1,609,334	-				+2.0
1,609,335	+				-0.6
1,609,336	-				+0.2
1,609,337	+				-0.4
1,609,351	-				+1.0
1,609,352	+				+0.1
1,609,400	+				-0.3
1,609,433	-				+0.1
1,609,433	-				+0.6
1,609,435	-				-0.4
1,609,435	-				-0.3
1,609,455	-		MMJJ_RS08735	0.11	+0.6
1,609,475	-		MMJJ_RS08735	0.13	+0.2
1,609,476	+		MMJJ_RS08735	0.14	+0.4
1,609,510	-		MMJJ_RS08735	0.18	+0.5
1,609,511	+		MMJJ_RS08735	0.18	-0.3
1,609,511	+		MMJJ_RS08735	0.18	-0.9
1,609,514	-		MMJJ_RS08735	0.19	-0.1
1,609,515	+		MMJJ_RS08735	0.19	+0.4
1,609,580	+		MMJJ_RS08735	0.27	-0.5
1,609,610	+		MMJJ_RS08735	0.31	+1.6
1,609,610	+		MMJJ_RS08735	0.31	-0.0
1,609,652	-		MMJJ_RS08735	0.37	-0.2
1,609,714	+		MMJJ_RS08735	0.45	-0.1
1,609,718	-		MMJJ_RS08735	0.46	+0.4
1,609,718	-		MMJJ_RS08735	0.46	-0.4
1,609,718	-		MMJJ_RS08735	0.46	+0.2
1,609,718	-		MMJJ_RS08735	0.46	-0.4
1,609,718	-		MMJJ_RS08735	0.46	-0.1
1,609,718	-		MMJJ_RS08735	0.46	-0.2
1,609,719	+		MMJJ_RS08735	0.46	+0.5
1,609,719	+		MMJJ_RS08735	0.46	-0.6
1,609,719	+		MMJJ_RS08735	0.46	+0.3
1,609,719	+		MMJJ_RS08735	0.46	-0.6
1,609,719	+		MMJJ_RS08735	0.46	+0.6
1,609,719	+		MMJJ_RS08735	0.46	-0.4
1,609,719	+		MMJJ_RS08735	0.46	+0.9
1,609,719	+		MMJJ_RS08735	0.46	-0.0
1,609,719	+		MMJJ_RS08735	0.46	-0.0
1,609,719	+		MMJJ_RS08735	0.46	+0.3
1,609,719	+		MMJJ_RS08735	0.46	+0.1
1,609,719	+		MMJJ_RS08735	0.46	+0.3
1,609,719	+		MMJJ_RS08735	0.46	-0.3
1,609,720	-		MMJJ_RS08735	0.46	+0.1
1,609,733	-		MMJJ_RS08735	0.48	+0.3
1,609,734	+		MMJJ_RS08735	0.48	-0.2
1,609,750	-		MMJJ_RS08735	0.50	-0.4
1,609,750	-		MMJJ_RS08735	0.50	+0.4
1,609,751	+		MMJJ_RS08735	0.50	+0.3
1,609,751	+		MMJJ_RS08735	0.50	+0.1
1,609,751	+		MMJJ_RS08735	0.50	-0.1
1,609,751	+		MMJJ_RS08735	0.50	-0.1
1,609,759	-		MMJJ_RS08735	0.51	-0.9
1,609,759	-		MMJJ_RS08735	0.51	+0.4
1,609,760	+		MMJJ_RS08735	0.51	-0.3
1,609,775	+		MMJJ_RS08735	0.53	+0.5
1,609,775	+		MMJJ_RS08735	0.53	+0.4
1,609,780	+		MMJJ_RS08735	0.54	-0.0
1,609,788	-		MMJJ_RS08735	0.55	-0.2
1,609,805	+		MMJJ_RS08735	0.57	-0.7
1,609,860	-		MMJJ_RS08735	0.65	+0.4
1,609,860	-		MMJJ_RS08735	0.65	+0.4
1,609,860	-		MMJJ_RS08735	0.65	-0.1
1,609,872	+		MMJJ_RS08735	0.66	-0.4
1,609,945	+		MMJJ_RS08735	0.76	+0.1
1,609,960	-		MMJJ_RS08735	0.78	+0.5
1,609,960	-		MMJJ_RS08735	0.78	+0.2
1,609,961	+		MMJJ_RS08735	0.78	+0.8
1,609,961	+		MMJJ_RS08735	0.78	+0.6
1,609,961	+		MMJJ_RS08735	0.78	+1.4
1,609,961	+		MMJJ_RS08735	0.78	+0.2
1,609,961	+		MMJJ_RS08735	0.78	+0.1
1,609,969	-		MMJJ_RS08735	0.79	-0.0
1,609,976	-		MMJJ_RS08735	0.80	+0.1
1,609,977	+		MMJJ_RS08735	0.80	-0.1
1,610,017	-		MMJJ_RS08735	0.86	-0.1
1,610,018	+		MMJJ_RS08735	0.86	+0.5
1,610,087	+				+0.8
1,610,112	+				-0.3
1,610,117	+				-0.1
1,610,119	-				+0.3
1,610,120	+				-0.3
1,610,128	-				+2.0
1,610,148	+				+0.3
1,610,159	-				+0.4
1,610,190	-				-0.5
1,610,223	-				+0.9
1,610,224	+				+0.0
1,610,224	+				-0.5
1,610,224	+				+0.4
1,610,224	+				-1.2
1,610,241	-		MMJJ_RS08740	0.10	+0.3
1,610,241	-		MMJJ_RS08740	0.10	+1.0
1,610,242	+		MMJJ_RS08740	0.11	+0.8
1,610,305	-		MMJJ_RS08740	0.20	+0.2
1,610,306	+		MMJJ_RS08740	0.20	+0.5
1,610,306	+		MMJJ_RS08740	0.20	-1.6
1,610,309	-		MMJJ_RS08740	0.20	+0.2
1,610,309	-		MMJJ_RS08740	0.20	+0.5
1,610,309	-		MMJJ_RS08740	0.20	+1.1
1,610,310	+		MMJJ_RS08740	0.21	+0.1
1,610,310	+		MMJJ_RS08740	0.21	-0.0
1,610,310	+		MMJJ_RS08740	0.21	-0.2
1,610,310	+		MMJJ_RS08740	0.21	-0.3
1,610,310	+		MMJJ_RS08740	0.21	-0.6
1,610,310	+		MMJJ_RS08740	0.21	+0.2
1,610,344	+		MMJJ_RS08740	0.26	-0.2
1,610,346	-		MMJJ_RS08740	0.26	+0.0
1,610,381	-		MMJJ_RS08740	0.31	+0.0
1,610,395	-		MMJJ_RS08740	0.33	+0.2
1,610,396	+		MMJJ_RS08740	0.33	+0.9
1,610,422	-		MMJJ_RS08740	0.37	+0.4
1,610,423	+		MMJJ_RS08740	0.37	-0.2
1,610,427	-		MMJJ_RS08740	0.38	+0.3
1,610,428	+		MMJJ_RS08740	0.38	-0.0
1,610,503	-		MMJJ_RS08740	0.49	-0.3
1,610,546	-		MMJJ_RS08740	0.56	-0.3
1,610,546	-		MMJJ_RS08740	0.56	+0.4
1,610,547	+		MMJJ_RS08740	0.56	-0.0
1,610,561	-		MMJJ_RS08740	0.58	+0.4
1,610,565	+		MMJJ_RS08740	0.58	+0.6
1,610,565	+		MMJJ_RS08740	0.58	+0.5
1,610,565	+		MMJJ_RS08740	0.58	-0.8
1,610,576	-		MMJJ_RS08740	0.60	-0.0
1,610,576	-		MMJJ_RS08740	0.60	+0.4
1,610,577	+		MMJJ_RS08740	0.60	+0.7
1,610,577	+		MMJJ_RS08740	0.60	+0.9
1,610,577	+		MMJJ_RS08740	0.60	+0.0
1,610,578	-		MMJJ_RS08740	0.60	+0.5
1,610,579	+		MMJJ_RS08740	0.60	-0.0
1,610,579	+		MMJJ_RS08740	0.60	+0.8
1,610,579	+		MMJJ_RS08740	0.60	+0.1
1,610,594	+		MMJJ_RS08740	0.63	-0.1
1,610,622	-		MMJJ_RS08740	0.67	+0.1
1,610,622	-		MMJJ_RS08740	0.67	+0.3
1,610,622	-		MMJJ_RS08740	0.67	+0.0
1,610,623	+		MMJJ_RS08740	0.67	-0.1
1,610,623	+		MMJJ_RS08740	0.67	+0.7
1,610,623	+		MMJJ_RS08740	0.67	-0.1
1,610,623	+		MMJJ_RS08740	0.67	+0.4
1,610,630	-		MMJJ_RS08740	0.68	-0.8
1,610,630	-		MMJJ_RS08740	0.68	-0.0
1,610,630	-		MMJJ_RS08740	0.68	-0.9
1,610,630	-		MMJJ_RS08740	0.68	+0.6
1,610,631	+		MMJJ_RS08740	0.68	-0.3
1,610,722	+		MMJJ_RS08740	0.82	+0.2
1,610,739	-		MMJJ_RS08740	0.84	+0.4
1,610,739	-		MMJJ_RS08740	0.84	-0.2
1,610,739	-		MMJJ_RS08740	0.84	-0.6
1,610,749	+		MMJJ_RS08740	0.86	+0.3
1,610,752	+		MMJJ_RS08740	0.86	+1.0
1,610,752	+		MMJJ_RS08740	0.86	+0.3
1,610,762	+		MMJJ_RS08740	0.88	+0.1
1,610,793	-				+0.5
1,610,793	-				-0.4
1,610,794	+				+0.7
1,610,794	+				-0.4
1,610,796	+				+0.1
1,610,809	+				-0.8
1,610,809	+				-0.7
1,610,829	-				-1.2
1,610,863	+				+0.4
1,610,871	+				+0.1
1,610,873	-				+1.0
1,610,874	+				-0.6
1,610,935	+				-0.1
1,610,972	-		MMJJ_RS08745	0.10	+0.5
1,611,024	-		MMJJ_RS08745	0.15	+0.6
1,611,048	+		MMJJ_RS08745	0.17	+0.1
1,611,053	-		MMJJ_RS08745	0.18	-0.2
1,611,112	-		MMJJ_RS08745	0.24	+0.7
1,611,112	-		MMJJ_RS08745	0.24	-0.0
1,611,120	-		MMJJ_RS08745	0.24	+0.1
1,611,120	-		MMJJ_RS08745	0.24	-0.1
1,611,121	+		MMJJ_RS08745	0.24	-0.3
1,611,121	+		MMJJ_RS08745	0.24	+1.1
1,611,131	-		MMJJ_RS08745	0.25	+0.5
1,611,133	-		MMJJ_RS08745	0.25	+0.6
1,611,134	+		MMJJ_RS08745	0.26	-0.4
1,611,174	+		MMJJ_RS08745	0.29	+0.4
1,611,230	-		MMJJ_RS08745	0.35	+0.5
1,611,230	-		MMJJ_RS08745	0.35	+0.5
1,611,230	-		MMJJ_RS08745	0.35	+0.0
1,611,230	-		MMJJ_RS08745	0.35	-0.2
1,611,231	+		MMJJ_RS08745	0.35	-0.2
1,611,235	-		MMJJ_RS08745	0.35	+0.2
1,611,267	-		MMJJ_RS08745	0.38	-0.1
1,611,268	+		MMJJ_RS08745	0.38	-0.5
1,611,279	+		MMJJ_RS08745	0.39	+0.1
1,611,284	-		MMJJ_RS08745	0.40	-0.6
1,611,285	+		MMJJ_RS08745	0.40	+0.2
1,611,336	+		MMJJ_RS08745	0.45	-0.4
1,611,340	-		MMJJ_RS08745	0.45	+0.4
1,611,340	-		MMJJ_RS08745	0.45	-0.8
1,611,340	-		MMJJ_RS08745	0.45	-0.1
1,611,341	+		MMJJ_RS08745	0.45	-0.3
1,611,341	+		MMJJ_RS08745	0.45	+0.4
1,611,341	+		MMJJ_RS08745	0.45	+0.8
1,611,343	+		MMJJ_RS08745	0.45	-0.2
1,611,343	+		MMJJ_RS08745	0.45	-0.5
1,611,346	-		MMJJ_RS08745	0.46	-0.5
1,611,348	-		MMJJ_RS08745	0.46	+0.1
1,611,536	-		MMJJ_RS08745	0.64	-0.3
1,611,537	+		MMJJ_RS08745	0.64	-0.1
1,611,539	-		MMJJ_RS08745	0.64	-0.2
1,611,588	-		MMJJ_RS08745	0.68	-0.3
1,611,599	-		MMJJ_RS08745	0.69	-1.0
1,611,600	+		MMJJ_RS08745	0.70	+0.1
1,611,627	-		MMJJ_RS08745	0.72	+0.3
1,611,641	-		MMJJ_RS08745	0.73	+0.7
1,611,656	+		MMJJ_RS08745	0.75	-0.4
1,611,702	-		MMJJ_RS08745	0.79	+0.1
1,611,743	-		MMJJ_RS08745	0.83	-1.6
1,611,744	+		MMJJ_RS08745	0.83	-0.3
1,611,765	-		MMJJ_RS08745	0.85	-0.7
1,611,800	-		MMJJ_RS08745	0.88	-0.2
1,611,800	-		MMJJ_RS08745	0.88	+0.1
1,611,800	-				-0.6
1,611,800	-		MMJJ_RS08745	0.88	+0.9
1,611,800	-		MMJJ_RS08745	0.88	-0.2
1,611,800	-		MMJJ_RS08745	0.88	+0.3
1,611,801	+		MMJJ_RS08745	0.89	-0.0
1,611,801	+		MMJJ_RS08745	0.89	-0.0
1,611,808	+		MMJJ_RS08745	0.89	-0.1
1,611,825	-				+0.3
1,611,828	+				-0.6