Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07415

Experiment: R2A with Manganese (II) chloride tetrahydrate 3.125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Manganese (II) chloride tetrahydrate 3.125 mM
1,598,232	-		LRK54_RS07410	0.61	+2.9
1,598,332	-		LRK54_RS07410	0.66	-0.6
1,598,348	+		LRK54_RS07410	0.66	-0.7
1,598,348	+		LRK54_RS07410	0.66	-0.6
1,598,349	-		LRK54_RS07410	0.66	-0.4
1,598,349	-		LRK54_RS07410	0.66	+0.3
1,598,487	+		LRK54_RS07410	0.72	+1.0
1,598,488	-		LRK54_RS07410	0.72	-0.4
1,598,542	+		LRK54_RS07410	0.74	-0.4
1,598,543	-		LRK54_RS07410	0.74	-0.1
1,598,543	-		LRK54_RS07410	0.74	-0.2
1,598,588	+		LRK54_RS07410	0.76	-0.9
1,598,588	+		LRK54_RS07410	0.76	-0.9
1,598,588	+		LRK54_RS07410	0.76	-1.9
1,598,598	+		LRK54_RS07410	0.77	-1.0
1,598,616	+		LRK54_RS07410	0.78	-1.2
1,598,616	+		LRK54_RS07410	0.78	-0.9
1,598,662	-		LRK54_RS07410	0.79	-0.0
1,598,662	-		LRK54_RS07410	0.79	+0.8
1,598,671	-		LRK54_RS07410	0.80	+0.3
1,598,711	+		LRK54_RS07410	0.82	-1.9
1,598,711	+		LRK54_RS07410	0.82	-0.1
1,598,712	-		LRK54_RS07410	0.82	+0.6
1,598,712	-		LRK54_RS07410	0.82	-0.3
1,598,924	+				-1.2
1,598,925	-				-0.4
1,598,925	-				-0.1
1,598,925	-				+0.3
1,598,961	+				+0.1
1,598,961	+				-0.1
1,598,961	+				+0.4
1,598,970	+				+0.4
1,598,971	-				+0.2
1,598,971	-				+0.6
1,598,971	-				-1.8
1,598,982	+				+0.4
1,598,982	+				-0.3
1,598,982	+				+0.9
1,598,982	+				+0.4
1,598,983	-				+0.6
1,598,983	-				-0.0
1,598,983	-				-1.0
1,598,983	-				+1.4
1,599,019	+				+0.3
1,599,019	+				-0.9
1,599,019	+				-0.4
1,599,020	-				-0.9
1,599,020	-				-0.8
1,599,137	+				-1.0
1,599,137	+				-0.3
1,599,138	-				-0.6
1,599,176	+				-0.6
1,599,176	+				+1.4
1,599,176	+				-1.0
1,599,177	-				+0.2
1,599,177	-				-0.6
1,599,254	+		LRK54_RS07415	0.11	-0.7
1,599,254	+		LRK54_RS07415	0.11	+0.7
1,599,254	+		LRK54_RS07415	0.11	-1.9
1,599,254	+		LRK54_RS07415	0.11	-0.6
1,599,254	+		LRK54_RS07415	0.11	-1.1
1,599,254	+		LRK54_RS07415	0.11	-0.3
1,599,254	+		LRK54_RS07415	0.11	+1.8
1,599,254	+		LRK54_RS07415	0.11	-0.6
1,599,254	+		LRK54_RS07415	0.11	+0.1
1,599,254	+		LRK54_RS07415	0.11	-2.2
1,599,254	+		LRK54_RS07415	0.11	-0.9
1,599,254	+		LRK54_RS07415	0.11	+1.6
1,599,254	+		LRK54_RS07415	0.11	+2.4
1,599,254	+		LRK54_RS07415	0.11	+0.0
1,599,255	-		LRK54_RS07415	0.11	-0.3
1,599,255	-		LRK54_RS07415	0.11	+1.1
1,599,255	-		LRK54_RS07415	0.11	-1.8
1,599,255	-		LRK54_RS07415	0.11	-0.5
1,599,255	-		LRK54_RS07415	0.11	-2.6
1,599,255	-		LRK54_RS07415	0.11	-0.7
1,599,255	-		LRK54_RS07415	0.11	-0.4
1,599,255	-		LRK54_RS07415	0.11	-0.9
1,599,257	+		LRK54_RS07415	0.11	+0.4
1,599,257	+		LRK54_RS07415	0.11	-1.1
1,599,257	+		LRK54_RS07415	0.11	-2.0
1,599,257	+		LRK54_RS07415	0.11	-0.7
1,599,258	-		LRK54_RS07415	0.11	-1.0
1,599,258	-		LRK54_RS07415	0.11	-0.3
1,599,382	-		LRK54_RS07415	0.24	+1.0
1,599,393	+		LRK54_RS07415	0.25	+1.0
1,599,440	+		LRK54_RS07415	0.30	-0.2
1,599,959	+		LRK54_RS07415	0.83	+0.7
1,599,959	+		LRK54_RS07415	0.83	-0.2
1,599,960	-		LRK54_RS07415	0.83	+0.2
1,600,052	+				+0.1
1,600,052	+				-0.4
1,600,052	+				-0.5
1,600,052	+				-0.1
1,600,052	+				+0.0
1,600,052	+				+2.9
1,600,052	+				-1.0
1,600,052	+				+0.0
1,600,052	+				+0.0
1,600,052	+				-1.0
1,600,052	+				-1.0
1,600,052	+				-0.3
1,600,052	+				-1.2
1,600,052	+				+0.6
1,600,052	+				-0.8
1,600,052	+				+0.1
1,600,053	-				-0.8
1,600,053	-				-0.8
1,600,053	-				-0.1
1,600,053	-				-0.6
1,600,053	-				+1.4
1,600,053	-				-0.8
1,600,053	-				-2.4
1,600,053	-				-0.4
1,600,053	-				-0.6
1,600,053	-				-1.4
1,600,053	-				-0.6
1,600,053	-				-0.7
1,600,053	-				-0.2
1,600,053	-				+0.3
1,600,053	-				+0.0
1,600,064	+				+0.1
1,600,398	+		LRK54_RS07420	0.29	+0.4
1,600,398	+		LRK54_RS07420	0.29	+0.5
1,600,398	+		LRK54_RS07420	0.29	-0.4
1,600,398	+		LRK54_RS07420	0.29	-0.9
1,600,398	+		LRK54_RS07420	0.29	+0.2
1,600,398	+		LRK54_RS07420	0.29	-0.5
1,600,398	+		LRK54_RS07420	0.29	-0.4
1,600,398	+		LRK54_RS07420	0.29	+0.1
1,600,398	+		LRK54_RS07420	0.29	-0.4
1,600,399	-		LRK54_RS07420	0.30	-0.4
1,600,399	-		LRK54_RS07420	0.30	+0.6
1,600,399	-		LRK54_RS07420	0.30	+0.0
1,600,399	-		LRK54_RS07420	0.30	+0.4
1,600,399	-		LRK54_RS07420	0.30	+0.4
1,600,399	-		LRK54_RS07420	0.30	-0.4
1,600,399	-		LRK54_RS07420	0.30	+0.1
1,600,399	-		LRK54_RS07420	0.30	-0.7
1,600,399	-		LRK54_RS07420	0.30	-0.9
1,600,399	-		LRK54_RS07420	0.30	+0.7
1,600,399	-		LRK54_RS07420	0.30	-2.2
1,600,399	-		LRK54_RS07420	0.30	+1.4
1,600,399	-		LRK54_RS07420	0.30	-0.3
1,600,399	-		LRK54_RS07420	0.30	+0.8
1,600,399	-		LRK54_RS07420	0.30	+1.7
1,600,399	-		LRK54_RS07420	0.30	-1.0
1,600,399	-		LRK54_RS07420	0.30	-1.1
1,600,399	-		LRK54_RS07420	0.30	-0.0
1,600,399	-		LRK54_RS07420	0.30	-2.8
1,600,400	+		LRK54_RS07420	0.30	-0.1
1,600,400	+		LRK54_RS07420	0.30	-0.1
1,600,400	+		LRK54_RS07420	0.30	+1.6
1,600,400	+		LRK54_RS07420	0.30	-0.5
1,600,400	+		LRK54_RS07420	0.30	-0.1
1,600,400	+		LRK54_RS07420	0.30	-2.1
1,600,401	-		LRK54_RS07420	0.30	+0.2
1,600,401	-		LRK54_RS07420	0.30	+0.5
1,600,401	-		LRK54_RS07420	0.30	-0.5
1,600,401	-		LRK54_RS07420	0.30	+0.8
1,600,401	-		LRK54_RS07420	0.30	+1.0
1,600,401	-		LRK54_RS07420	0.30	+0.5
1,600,606	+		LRK54_RS07420	0.52	-0.4
1,600,607	-		LRK54_RS07420	0.52	+0.5
1,600,607	-		LRK54_RS07420	0.52	+1.4
1,600,607	-		LRK54_RS07420	0.52	-0.8
1,600,607	-		LRK54_RS07420	0.52	-0.1
1,600,607	-		LRK54_RS07420	0.52	-0.6
1,600,607	-		LRK54_RS07420	0.52	-0.4
1,600,607	-		LRK54_RS07420	0.52	+0.6
1,600,618	+		LRK54_RS07420	0.53	-1.7
1,600,618	+		LRK54_RS07420	0.53	+0.4
1,600,618	+		LRK54_RS07420	0.53	-1.0
1,600,619	-		LRK54_RS07420	0.53	+0.0
1,600,619	-		LRK54_RS07420	0.53	-1.6
1,600,619	-		LRK54_RS07420	0.53	+0.9
1,600,633	+		LRK54_RS07420	0.55	-0.2
1,600,633	+		LRK54_RS07420	0.55	-0.2
1,600,633	+		LRK54_RS07420	0.55	-1.2
1,600,633	+		LRK54_RS07420	0.55	+1.2
1,600,633	+		LRK54_RS07420	0.55	-0.8
1,600,634	-		LRK54_RS07420	0.55	-0.1
1,600,634	-		LRK54_RS07420	0.55	-0.3
1,600,634	-		LRK54_RS07420	0.55	-0.7
1,600,634	-		LRK54_RS07420	0.55	-1.0
1,600,634	-		LRK54_RS07420	0.55	-0.3
1,600,634	-		LRK54_RS07420	0.55	-0.1
1,600,796	-		LRK54_RS07420	0.72	-0.4
1,600,796	-		LRK54_RS07420	0.72	+0.2
1,600,825	+		LRK54_RS07420	0.76	-0.6
1,600,825	+		LRK54_RS07420	0.76	+0.4
1,600,825	+		LRK54_RS07420	0.76	-0.4
1,600,826	-		LRK54_RS07420	0.76	-1.3
1,600,826	-		LRK54_RS07420	0.76	-0.2
1,600,826	-		LRK54_RS07420	0.76	+0.3
1,600,984	-				+0.0
1,601,034	+				-0.7
1,601,034	+				-0.3
1,601,034	+				-0.1
1,601,034	+				-0.7
1,601,034	+				-0.4
1,601,034	+				+0.5
1,601,035	-				+0.4
1,601,035	-				-2.3
1,601,035	-				-0.2
1,601,035	-				-1.5
1,601,035	-				-0.2
1,601,035	-				+0.2
1,601,035	-				+0.4
1,601,035	-				+0.4
1,601,102	+				+0.1
1,601,103	-				-1.1
1,601,122	+				-0.7
1,601,122	+				-0.6
1,601,122	+				+1.0
1,601,122	+				+0.0
1,601,123	-				+0.6
1,601,123	-				+0.9
1,601,123	-				+0.2
1,601,123	-				-1.1
1,601,123	-				-0.4