Experiment: R2A with Manganese (II) chloride tetrahydrate 3.125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS04370 and LRK54_RS04375 overlap by 4 nucleotides LRK54_RS04375 and LRK54_RS04380 are separated by 10 nucleotides
LRK54_RS04370: LRK54_RS04370 - threonine/serine exporter family protein, at 922,130 to 923,410
_RS04370
LRK54_RS04375: LRK54_RS04375 - NfeD family protein, at 923,407 to 923,853
_RS04375
LRK54_RS04380: LRK54_RS04380 - SPFH/Band 7/PHB domain protein, at 923,864 to 924,808
_RS04380
Position (kb) 923
924 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 922.449 kb on + strand, within LRK54_RS04370 at 922.449 kb on + strand, within LRK54_RS04370 at 922.449 kb on + strand, within LRK54_RS04370 at 922.449 kb on + strand, within LRK54_RS04370 at 922.449 kb on + strand, within LRK54_RS04370 at 922.450 kb on - strand, within LRK54_RS04370 at 922.989 kb on + strand, within LRK54_RS04370 at 922.989 kb on + strand, within LRK54_RS04370 at 922.989 kb on + strand, within LRK54_RS04370 at 922.989 kb on + strand, within LRK54_RS04370 at 922.989 kb on + strand, within LRK54_RS04370 at 922.989 kb on + strand, within LRK54_RS04370 at 922.990 kb on - strand, within LRK54_RS04370 at 922.990 kb on - strand, within LRK54_RS04370 at 923.310 kb on + strand at 923.310 kb on + strand at 923.311 kb on - strand at 923.452 kb on + strand, within LRK54_RS04375 at 923.452 kb on + strand, within LRK54_RS04375 at 923.452 kb on + strand, within LRK54_RS04375 at 923.452 kb on + strand, within LRK54_RS04375 at 923.452 kb on + strand, within LRK54_RS04375 at 923.452 kb on + strand, within LRK54_RS04375 at 923.452 kb on + strand, within LRK54_RS04375 at 923.453 kb on - strand, within LRK54_RS04375 at 923.453 kb on - strand, within LRK54_RS04375 at 923.453 kb on - strand, within LRK54_RS04375 at 923.453 kb on - strand, within LRK54_RS04375 at 923.453 kb on - strand, within LRK54_RS04375 at 923.453 kb on - strand, within LRK54_RS04375 at 923.453 kb on - strand, within LRK54_RS04375 at 923.453 kb on - strand, within LRK54_RS04375 at 923.453 kb on - strand, within LRK54_RS04375 at 923.558 kb on + strand, within LRK54_RS04375 at 923.558 kb on + strand, within LRK54_RS04375 at 923.558 kb on + strand, within LRK54_RS04375 at 923.559 kb on - strand, within LRK54_RS04375 at 923.559 kb on - strand, within LRK54_RS04375 at 923.559 kb on - strand, within LRK54_RS04375 at 923.559 kb on - strand, within LRK54_RS04375 at 923.674 kb on + strand, within LRK54_RS04375 at 923.674 kb on + strand, within LRK54_RS04375 at 923.674 kb on + strand, within LRK54_RS04375 at 923.675 kb on - strand, within LRK54_RS04375 at 923.675 kb on - strand, within LRK54_RS04375 at 923.774 kb on + strand, within LRK54_RS04375 at 923.774 kb on + strand, within LRK54_RS04375 at 923.774 kb on + strand, within LRK54_RS04375 at 923.774 kb on + strand, within LRK54_RS04375 at 923.775 kb on - strand, within LRK54_RS04375 at 923.775 kb on - strand, within LRK54_RS04375 at 923.831 kb on + strand at 923.831 kb on + strand at 923.831 kb on + strand at 923.831 kb on + strand at 923.831 kb on + strand at 923.831 kb on + strand at 923.831 kb on + strand at 923.831 kb on + strand at 923.831 kb on + strand at 923.831 kb on + strand at 923.831 kb on + strand at 923.832 kb on - strand at 923.832 kb on - strand at 923.832 kb on - strand at 923.832 kb on - strand at 923.832 kb on - strand at 923.832 kb on - strand at 923.832 kb on - strand at 923.832 kb on - strand at 923.832 kb on - strand at 923.832 kb on - strand at 923.832 kb on - strand at 923.832 kb on - strand at 924.030 kb on + strand, within LRK54_RS04380 at 924.030 kb on + strand, within LRK54_RS04380 at 924.030 kb on + strand, within LRK54_RS04380 at 924.030 kb on + strand, within LRK54_RS04380 at 924.030 kb on + strand, within LRK54_RS04380 at 924.030 kb on + strand, within LRK54_RS04380 at 924.030 kb on + strand, within LRK54_RS04380 at 924.030 kb on + strand, within LRK54_RS04380 at 924.030 kb on + strand, within LRK54_RS04380 at 924.030 kb on + strand, within LRK54_RS04380 at 924.030 kb on + strand, within LRK54_RS04380 at 924.030 kb on + strand, within LRK54_RS04380 at 924.031 kb on - strand, within LRK54_RS04380 at 924.031 kb on - strand, within LRK54_RS04380 at 924.031 kb on - strand, within LRK54_RS04380 at 924.031 kb on - strand, within LRK54_RS04380 at 924.031 kb on - strand, within LRK54_RS04380 at 924.031 kb on - strand, within LRK54_RS04380 at 924.031 kb on - strand, within LRK54_RS04380 at 924.031 kb on - strand, within LRK54_RS04380 at 924.031 kb on - strand, within LRK54_RS04380 at 924.031 kb on - strand, within LRK54_RS04380 at 924.031 kb on - strand, within LRK54_RS04380 at 924.031 kb on - strand, within LRK54_RS04380 at 924.048 kb on + strand, within LRK54_RS04380 at 924.048 kb on + strand, within LRK54_RS04380 at 924.048 kb on + strand, within LRK54_RS04380 at 924.048 kb on + strand, within LRK54_RS04380 at 924.048 kb on + strand, within LRK54_RS04380 at 924.049 kb on - strand, within LRK54_RS04380 at 924.049 kb on - strand, within LRK54_RS04380 at 924.049 kb on - strand, within LRK54_RS04380 at 924.049 kb on - strand, within LRK54_RS04380 at 924.049 kb on - strand, within LRK54_RS04380 at 924.049 kb on - strand, within LRK54_RS04380 at 924.049 kb on - strand, within LRK54_RS04380 at 924.049 kb on - strand, within LRK54_RS04380 at 924.049 kb on - strand, within LRK54_RS04380 at 924.049 kb on - strand, within LRK54_RS04380 at 924.049 kb on - strand, within LRK54_RS04380 at 924.510 kb on + strand, within LRK54_RS04380 at 924.510 kb on + strand, within LRK54_RS04380 at 924.510 kb on + strand, within LRK54_RS04380 at 924.510 kb on + strand, within LRK54_RS04380 at 924.510 kb on + strand, within LRK54_RS04380 at 924.510 kb on + strand, within LRK54_RS04380 at 924.510 kb on + strand, within LRK54_RS04380 at 924.510 kb on + strand, within LRK54_RS04380 at 924.510 kb on + strand, within LRK54_RS04380 at 924.510 kb on + strand, within LRK54_RS04380 at 924.510 kb on + strand, within LRK54_RS04380 at 924.510 kb on + strand, within LRK54_RS04380 at 924.511 kb on - strand, within LRK54_RS04380 at 924.511 kb on - strand, within LRK54_RS04380 at 924.511 kb on - strand, within LRK54_RS04380 at 924.511 kb on - strand, within LRK54_RS04380 at 924.511 kb on - strand, within LRK54_RS04380 at 924.540 kb on + strand, within LRK54_RS04380 at 924.540 kb on + strand, within LRK54_RS04380 at 924.540 kb on + strand, within LRK54_RS04380 at 924.540 kb on + strand, within LRK54_RS04380 at 924.540 kb on + strand, within LRK54_RS04380 at 924.541 kb on - strand, within LRK54_RS04380 at 924.541 kb on - strand, within LRK54_RS04380 at 924.541 kb on - strand, within LRK54_RS04380 at 924.541 kb on - strand, within LRK54_RS04380 at 924.541 kb on - strand, within LRK54_RS04380 at 924.541 kb on - strand, within LRK54_RS04380 at 924.541 kb on - strand, within LRK54_RS04380 at 924.541 kb on - strand, within LRK54_RS04380 at 924.541 kb on - strand, within LRK54_RS04380 at 924.541 kb on - strand, within LRK54_RS04380 at 924.541 kb on - strand, within LRK54_RS04380 at 924.651 kb on + strand, within LRK54_RS04380 at 924.651 kb on + strand, within LRK54_RS04380 at 924.651 kb on + strand, within LRK54_RS04380 at 924.651 kb on + strand, within LRK54_RS04380 at 924.651 kb on + strand, within LRK54_RS04380 at 924.651 kb on + strand, within LRK54_RS04380 at 924.651 kb on + strand, within LRK54_RS04380 at 924.651 kb on + strand, within LRK54_RS04380 at 924.651 kb on + strand, within LRK54_RS04380 at 924.652 kb on - strand, within LRK54_RS04380 at 924.652 kb on - strand, within LRK54_RS04380 at 924.652 kb on - strand, within LRK54_RS04380 at 924.652 kb on - strand, within LRK54_RS04380 at 924.652 kb on - strand, within LRK54_RS04380 at 924.696 kb on + strand, within LRK54_RS04380 at 924.696 kb on + strand, within LRK54_RS04380 at 924.696 kb on + strand, within LRK54_RS04380 at 924.696 kb on + strand, within LRK54_RS04380 at 924.696 kb on + strand, within LRK54_RS04380 at 924.696 kb on + strand, within LRK54_RS04380 at 924.696 kb on + strand, within LRK54_RS04380 at 924.696 kb on + strand, within LRK54_RS04380 at 924.696 kb on + strand, within LRK54_RS04380 at 924.696 kb on + strand, within LRK54_RS04380 at 924.696 kb on + strand, within LRK54_RS04380 at 924.697 kb on - strand, within LRK54_RS04380 at 924.697 kb on - strand, within LRK54_RS04380 at 924.697 kb on - strand, within LRK54_RS04380 at 924.697 kb on - strand, within LRK54_RS04380 at 924.697 kb on - strand, within LRK54_RS04380 at 924.697 kb on - strand, within LRK54_RS04380 at 924.697 kb on - strand, within LRK54_RS04380 at 924.697 kb on - strand, within LRK54_RS04380 at 924.697 kb on - strand, within LRK54_RS04380 at 924.697 kb on - strand, within LRK54_RS04380 at 924.697 kb on - strand, within LRK54_RS04380 at 924.726 kb on + strand at 924.726 kb on + strand at 924.727 kb on - strand at 924.727 kb on - strand at 924.840 kb on + strand at 924.840 kb on + strand at 924.840 kb on + strand at 924.840 kb on + strand at 924.840 kb on + strand at 924.840 kb on + strand at 924.840 kb on + strand at 924.840 kb on + strand at 924.840 kb on + strand at 924.840 kb on + strand at 924.840 kb on + strand at 924.840 kb on + strand at 924.840 kb on + strand at 924.840 kb on + strand at 924.840 kb on + strand at 924.840 kb on + strand at 924.840 kb on + strand at 924.840 kb on + strand at 924.840 kb on + strand at 924.841 kb on - strand at 924.841 kb on - strand at 924.841 kb on - strand at 924.841 kb on - strand at 924.841 kb on - strand at 924.841 kb on - strand at 924.841 kb on - strand at 924.841 kb on - strand at 924.841 kb on - strand at 924.841 kb on - strand at 924.841 kb on - strand at 924.841 kb on - strand at 924.842 kb on + strand at 924.842 kb on + strand at 924.842 kb on + strand at 924.842 kb on + strand at 924.842 kb on + strand at 924.842 kb on + strand at 924.842 kb on + strand at 924.843 kb on - strand at 924.843 kb on - strand at 924.843 kb on - strand at 924.843 kb on - strand at 924.843 kb on - strand at 924.843 kb on - strand at 924.843 kb on - strand at 924.843 kb on - strand at 924.843 kb on - strand at 924.843 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Manganese (II) chloride tetrahydrate 3.125 mM remove 922,449 + LRK54_RS04370 0.25 -0.2 922,449 + LRK54_RS04370 0.25 -1.6 922,449 + LRK54_RS04370 0.25 -1.0 922,449 + LRK54_RS04370 0.25 -2.1 922,449 + LRK54_RS04370 0.25 -0.8 922,450 - LRK54_RS04370 0.25 -0.7 922,989 + LRK54_RS04370 0.67 -1.6 922,989 + LRK54_RS04370 0.67 -1.1 922,989 + LRK54_RS04370 0.67 -0.3 922,989 + LRK54_RS04370 0.67 -3.0 922,989 + LRK54_RS04370 0.67 -0.1 922,989 + LRK54_RS04370 0.67 +0.4 922,990 - LRK54_RS04370 0.67 -0.3 922,990 - LRK54_RS04370 0.67 -3.4 923,310 + +0.4 923,310 + -1.3 923,311 - +0.2 923,452 + LRK54_RS04375 0.10 -1.0 923,452 + LRK54_RS04375 0.10 -1.9 923,452 + LRK54_RS04375 0.10 -0.4 923,452 + LRK54_RS04375 0.10 -0.8 923,452 + LRK54_RS04375 0.10 -1.0 923,452 + LRK54_RS04375 0.10 -0.5 923,452 + LRK54_RS04375 0.10 +0.2 923,453 - LRK54_RS04375 0.10 +0.8 923,453 - LRK54_RS04375 0.10 -0.2 923,453 - LRK54_RS04375 0.10 -0.3 923,453 - LRK54_RS04375 0.10 -1.4 923,453 - LRK54_RS04375 0.10 -1.8 923,453 - LRK54_RS04375 0.10 -0.8 923,453 - LRK54_RS04375 0.10 -0.2 923,453 - LRK54_RS04375 0.10 +0.3 923,453 - LRK54_RS04375 0.10 +0.0 923,558 + LRK54_RS04375 0.34 -1.9 923,558 + LRK54_RS04375 0.34 +0.0 923,558 + LRK54_RS04375 0.34 -1.6 923,559 - LRK54_RS04375 0.34 -0.8 923,559 - LRK54_RS04375 0.34 -1.0 923,559 - LRK54_RS04375 0.34 -0.4 923,559 - LRK54_RS04375 0.34 -0.6 923,674 + LRK54_RS04375 0.60 -0.2 923,674 + LRK54_RS04375 0.60 -0.6 923,674 + LRK54_RS04375 0.60 -0.1 923,675 - LRK54_RS04375 0.60 +0.0 923,675 - LRK54_RS04375 0.60 +0.1 923,774 + LRK54_RS04375 0.82 +0.7 923,774 + LRK54_RS04375 0.82 -0.7 923,774 + LRK54_RS04375 0.82 +0.3 923,774 + LRK54_RS04375 0.82 -0.7 923,775 - LRK54_RS04375 0.82 -0.7 923,775 - LRK54_RS04375 0.82 -1.7 923,831 + -0.1 923,831 + -1.6 923,831 + -1.2 923,831 + -0.7 923,831 + +0.8 923,831 + -0.3 923,831 + +0.6 923,831 + +0.0 923,831 + -1.6 923,831 + -1.2 923,831 + -0.6 923,832 - -1.0 923,832 - -2.0 923,832 - -0.4 923,832 - +0.4 923,832 - +0.8 923,832 - +0.3 923,832 - -1.8 923,832 - +1.4 923,832 - -0.2 923,832 - -2.0 923,832 - -0.6 923,832 - +0.2 924,030 + LRK54_RS04380 0.18 -0.8 924,030 + LRK54_RS04380 0.18 +0.8 924,030 + LRK54_RS04380 0.18 -0.2 924,030 + LRK54_RS04380 0.18 -0.6 924,030 + LRK54_RS04380 0.18 -0.3 924,030 + LRK54_RS04380 0.18 +0.8 924,030 + LRK54_RS04380 0.18 -1.6 924,030 + LRK54_RS04380 0.18 +0.4 924,030 + LRK54_RS04380 0.18 +0.0 924,030 + LRK54_RS04380 0.18 +0.5 924,030 + LRK54_RS04380 0.18 -0.4 924,030 + LRK54_RS04380 0.18 +1.4 924,031 - LRK54_RS04380 0.18 +0.5 924,031 - LRK54_RS04380 0.18 +0.3 924,031 - LRK54_RS04380 0.18 +0.1 924,031 - LRK54_RS04380 0.18 +0.8 924,031 - LRK54_RS04380 0.18 +0.7 924,031 - LRK54_RS04380 0.18 +1.2 924,031 - LRK54_RS04380 0.18 +0.5 924,031 - LRK54_RS04380 0.18 +0.9 924,031 - LRK54_RS04380 0.18 +0.3 924,031 - LRK54_RS04380 0.18 +0.3 924,031 - LRK54_RS04380 0.18 -2.1 924,031 - LRK54_RS04380 0.18 +0.0 924,048 + LRK54_RS04380 0.19 +1.0 924,048 + LRK54_RS04380 0.19 -0.1 924,048 + LRK54_RS04380 0.19 -0.8 924,048 + LRK54_RS04380 0.19 -1.7 924,048 + LRK54_RS04380 0.19 -1.5 924,049 - LRK54_RS04380 0.20 +1.2 924,049 - LRK54_RS04380 0.20 -1.9 924,049 - LRK54_RS04380 0.20 +0.0 924,049 - LRK54_RS04380 0.20 -0.2 924,049 - LRK54_RS04380 0.20 -0.1 924,049 - LRK54_RS04380 0.20 +0.4 924,049 - LRK54_RS04380 0.20 -0.3 924,049 - LRK54_RS04380 0.20 -1.7 924,049 - LRK54_RS04380 0.20 -0.8 924,049 - LRK54_RS04380 0.20 +1.3 924,049 - LRK54_RS04380 0.20 -1.4 924,510 + LRK54_RS04380 0.68 +0.8 924,510 + LRK54_RS04380 0.68 -0.5 924,510 + LRK54_RS04380 0.68 +1.0 924,510 + LRK54_RS04380 0.68 -0.7 924,510 + LRK54_RS04380 0.68 -1.5 924,510 + LRK54_RS04380 0.68 -0.5 924,510 + LRK54_RS04380 0.68 -1.0 924,510 + LRK54_RS04380 0.68 -0.2 924,510 + LRK54_RS04380 0.68 -2.8 924,510 + LRK54_RS04380 0.68 -0.2 924,510 + LRK54_RS04380 0.68 -0.6 924,510 + LRK54_RS04380 0.68 +0.0 924,511 - LRK54_RS04380 0.68 -0.5 924,511 - LRK54_RS04380 0.68 -0.2 924,511 - LRK54_RS04380 0.68 -0.1 924,511 - LRK54_RS04380 0.68 +1.1 924,511 - LRK54_RS04380 0.68 +0.7 924,540 + LRK54_RS04380 0.72 -1.0 924,540 + LRK54_RS04380 0.72 -0.1 924,540 + LRK54_RS04380 0.72 -0.1 924,540 + LRK54_RS04380 0.72 -0.3 924,540 + LRK54_RS04380 0.72 -0.8 924,541 - LRK54_RS04380 0.72 -0.6 924,541 - LRK54_RS04380 0.72 -0.2 924,541 - LRK54_RS04380 0.72 -0.8 924,541 - LRK54_RS04380 0.72 +0.1 924,541 - LRK54_RS04380 0.72 +0.2 924,541 - LRK54_RS04380 0.72 -0.9 924,541 - LRK54_RS04380 0.72 -0.5 924,541 - LRK54_RS04380 0.72 -1.2 924,541 - LRK54_RS04380 0.72 +0.1 924,541 - LRK54_RS04380 0.72 -2.2 924,541 - LRK54_RS04380 0.72 +0.9 924,651 + LRK54_RS04380 0.83 -0.7 924,651 + LRK54_RS04380 0.83 +0.4 924,651 + LRK54_RS04380 0.83 +1.0 924,651 + LRK54_RS04380 0.83 -1.3 924,651 + LRK54_RS04380 0.83 -1.3 924,651 + LRK54_RS04380 0.83 -1.1 924,651 + LRK54_RS04380 0.83 -0.7 924,651 + LRK54_RS04380 0.83 -1.8 924,651 + LRK54_RS04380 0.83 +3.4 924,652 - LRK54_RS04380 0.83 +2.7 924,652 - LRK54_RS04380 0.83 -1.4 924,652 - LRK54_RS04380 0.83 +0.4 924,652 - LRK54_RS04380 0.83 +0.9 924,652 - LRK54_RS04380 0.83 +0.4 924,696 + LRK54_RS04380 0.88 -0.6 924,696 + LRK54_RS04380 0.88 +0.8 924,696 + LRK54_RS04380 0.88 -0.3 924,696 + LRK54_RS04380 0.88 +0.0 924,696 + LRK54_RS04380 0.88 -1.1 924,696 + LRK54_RS04380 0.88 -0.1 924,696 + LRK54_RS04380 0.88 -0.1 924,696 + LRK54_RS04380 0.88 -1.1 924,696 + LRK54_RS04380 0.88 -1.3 924,696 + LRK54_RS04380 0.88 -0.3 924,696 + LRK54_RS04380 0.88 -0.7 924,697 - LRK54_RS04380 0.88 -1.9 924,697 - LRK54_RS04380 0.88 -0.2 924,697 - LRK54_RS04380 0.88 -0.4 924,697 - LRK54_RS04380 0.88 -0.2 924,697 - LRK54_RS04380 0.88 -0.8 924,697 - LRK54_RS04380 0.88 -1.3 924,697 - LRK54_RS04380 0.88 -1.4 924,697 - LRK54_RS04380 0.88 +1.0 924,697 - LRK54_RS04380 0.88 +0.2 924,697 - LRK54_RS04380 0.88 +0.0 924,697 - LRK54_RS04380 0.88 +1.1 924,726 + +0.6 924,726 + +0.8 924,727 - +0.2 924,727 - -0.5 924,840 + -2.7 924,840 + +1.0 924,840 + +0.4 924,840 + -0.4 924,840 + +1.0 924,840 + -1.0 924,840 + -0.2 924,840 + -0.1 924,840 + -1.4 924,840 + +1.1 924,840 + +1.0 924,840 + -0.3 924,840 + -1.3 924,840 + -0.9 924,840 + -3.4 924,840 + -1.3 924,840 + +0.2 924,840 + -1.3 924,840 + -0.1 924,841 - +0.7 924,841 - +0.8 924,841 - -0.4 924,841 - +0.5 924,841 - -0.3 924,841 - -0.3 924,841 - -0.2 924,841 - -0.6 924,841 - +0.6 924,841 - -0.4 924,841 - -1.2 924,841 - +0.6 924,842 + +0.3 924,842 + +0.5 924,842 + +0.3 924,842 + -1.3 924,842 + +0.6 924,842 + +0.0 924,842 + +0.4 924,843 - -0.3 924,843 - -0.0 924,843 - -0.3 924,843 - +0.2 924,843 - +0.2 924,843 - -0.4 924,843 - +0.6 924,843 - +0.6 924,843 - -1.7 924,843 - -1.6
Or see this region's nucleotide sequence