Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS00545

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS00540 and HSERO_RS00545 are separated by 329 nucleotidesHSERO_RS00545 and HSERO_RS00550 are separated by 156 nucleotidesHSERO_RS00550 and HSERO_RS00555 are separated by 128 nucleotides HSERO_RS00540: HSERO_RS00540 - hemin transporter, at 126,935 to 128,080 _RS00540 HSERO_RS00545: HSERO_RS00545 - 30S ribosomal protein S12, at 128,410 to 128,793 _RS00545 HSERO_RS00550: HSERO_RS00550 - 30S ribosomal protein S7, at 128,950 to 129,420 _RS00550 HSERO_RS00555: HSERO_RS00555 - elongation factor G, at 129,549 to 131,654 _RS00555 Position (kb) 128 129Strain fitness (log2 ratio) -3 -2 -1 0 1at 127.618 kb on - strand, within HSERO_RS00540at 127.633 kb on - strand, within HSERO_RS00540at 127.635 kb on - strand, within HSERO_RS00540at 127.811 kb on + strand, within HSERO_RS00540at 127.858 kb on - strand, within HSERO_RS00540at 128.039 kb on + strandat 128.085 kb on + strandat 128.178 kb on - strandat 128.757 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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127,618 - HSERO_RS00540 0.60 -0.4
127,633 - HSERO_RS00540 0.61 +0.5
127,635 - HSERO_RS00540 0.61 +0.3
127,811 + HSERO_RS00540 0.76 +0.5
127,858 - HSERO_RS00540 0.81 +0.4
128,039 + -0.7
128,085 + -0.2
128,178 - -0.9
128,757 + -3.6

Or see this region's nucleotide sequence