Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23220 and CA265_RS23225 are separated by 11 nucleotides CA265_RS23225 and CA265_RS23230 are separated by 669 nucleotides CA265_RS23230 and CA265_RS23235 are separated by 96 nucleotides
CA265_RS23220: CA265_RS23220 - 12-oxophytodienoate reductase, at 5,679,346 to 5,680,446
_RS23220
CA265_RS23225: CA265_RS23225 - transcriptional regulator, at 5,680,458 to 5,680,760
_RS23225
CA265_RS23230: CA265_RS23230 - hypothetical protein, at 5,681,430 to 5,681,660
_RS23230
CA265_RS23235: CA265_RS23235 - transcriptional regulator, at 5,681,757 to 5,682,155
_RS23235
Position (kb) 5680
5681 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5679.458 kb on - strand, within CA265_RS23220 at 5679.510 kb on + strand, within CA265_RS23220 at 5679.775 kb on + strand, within CA265_RS23220 at 5679.783 kb on + strand, within CA265_RS23220 at 5679.787 kb on + strand, within CA265_RS23220 at 5679.891 kb on + strand, within CA265_RS23220 at 5679.897 kb on + strand, within CA265_RS23220 at 5679.926 kb on + strand, within CA265_RS23220 at 5679.944 kb on - strand, within CA265_RS23220 at 5680.122 kb on + strand, within CA265_RS23220 at 5680.155 kb on + strand, within CA265_RS23220 at 5680.172 kb on - strand, within CA265_RS23220 at 5680.285 kb on + strand, within CA265_RS23220 at 5680.430 kb on - strand at 5680.434 kb on + strand at 5680.435 kb on - strand at 5680.533 kb on + strand, within CA265_RS23225 at 5680.566 kb on + strand, within CA265_RS23225 at 5680.567 kb on - strand, within CA265_RS23225 at 5680.579 kb on + strand, within CA265_RS23225 at 5680.579 kb on + strand, within CA265_RS23225 at 5680.695 kb on + strand, within CA265_RS23225 at 5680.813 kb on + strand at 5680.825 kb on + strand at 5680.838 kb on + strand at 5680.839 kb on - strand at 5681.075 kb on - strand at 5681.406 kb on + strand at 5681.461 kb on + strand, within CA265_RS23230 at 5681.461 kb on + strand, within CA265_RS23230 at 5681.463 kb on + strand, within CA265_RS23230 at 5681.480 kb on + strand at 5681.480 kb on + strand, within CA265_RS23230 at 5681.558 kb on - strand, within CA265_RS23230 at 5681.645 kb on + strand at 5681.646 kb on - strand at 5681.653 kb on - strand at 5681.735 kb on + strand at 5681.758 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 5,679,458 - CA265_RS23220 0.10 -0.8 5,679,510 + CA265_RS23220 0.15 -0.1 5,679,775 + CA265_RS23220 0.39 -0.4 5,679,783 + CA265_RS23220 0.40 +0.5 5,679,787 + CA265_RS23220 0.40 -0.3 5,679,891 + CA265_RS23220 0.50 -1.0 5,679,897 + CA265_RS23220 0.50 -0.1 5,679,926 + CA265_RS23220 0.53 -1.0 5,679,944 - CA265_RS23220 0.54 -0.7 5,680,122 + CA265_RS23220 0.70 -0.1 5,680,155 + CA265_RS23220 0.73 +0.0 5,680,172 - CA265_RS23220 0.75 -0.7 5,680,285 + CA265_RS23220 0.85 +1.9 5,680,430 - -0.6 5,680,434 + -0.1 5,680,435 - -1.4 5,680,533 + CA265_RS23225 0.25 -0.9 5,680,566 + CA265_RS23225 0.36 -1.0 5,680,567 - CA265_RS23225 0.36 -1.5 5,680,579 + CA265_RS23225 0.40 -1.4 5,680,579 + CA265_RS23225 0.40 -1.1 5,680,695 + CA265_RS23225 0.78 -0.8 5,680,813 + -0.1 5,680,825 + -0.3 5,680,838 + -0.9 5,680,839 - -2.3 5,681,075 - -0.1 5,681,406 + +0.2 5,681,461 + CA265_RS23230 0.13 -0.5 5,681,461 + CA265_RS23230 0.13 +0.3 5,681,463 + CA265_RS23230 0.14 +0.5 5,681,480 + +1.3 5,681,480 + CA265_RS23230 0.22 +0.4 5,681,558 - CA265_RS23230 0.55 -0.4 5,681,645 + -1.0 5,681,646 - -1.4 5,681,653 - -0.9 5,681,735 + -2.0 5,681,758 + +0.4
Or see this region's nucleotide sequence