Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS10240

Experiment: NAG (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C)
2,516,375	+		CA265_RS10230	0.79	+0.3
2,516,375	+		CA265_RS10230	0.79	+0.3
2,516,379	+		CA265_RS10230	0.79	+0.8
2,516,379	+		CA265_RS10230	0.79	-1.2
2,516,379	+		CA265_RS10230	0.79	+0.1
2,516,380	-		CA265_RS10230	0.79	+0.2
2,516,380	-		CA265_RS10230	0.79	-0.1
2,516,380	-		CA265_RS10230	0.79	+1.3
2,516,395	+		CA265_RS10230	0.80	+0.1
2,516,494	+		CA265_RS10230	0.87	+0.1
2,516,495	-		CA265_RS10230	0.87	+0.5
2,516,503	+		CA265_RS10230	0.87	+0.2
2,516,624	-				+0.9
2,516,686	+				+0.1
2,516,700	+				+0.6
2,516,708	+				-0.2
2,516,709	-				-1.0
2,516,970	+		CA265_RS10235	0.76	-0.4
2,517,008	-		CA265_RS10235	0.88	-0.4
2,517,052	+				-0.7
2,517,068	-				-1.2
2,517,089	-				-2.4
2,517,089	-				-3.2
2,517,131	+				-0.1
2,517,132	-				-3.8
2,517,254	-				-2.4
2,517,282	-				-2.8
2,517,316	+				-0.7
2,517,387	-				-1.5
2,517,478	+		CA265_RS10240	0.13	-0.5
2,517,483	+		CA265_RS10240	0.13	-0.5
2,517,489	+		CA265_RS10240	0.14	+0.5
2,517,652	-		CA265_RS10240	0.23	-2.0
2,517,654	+		CA265_RS10240	0.23	-0.1
2,517,665	-		CA265_RS10240	0.24	-3.5
2,517,665	-		CA265_RS10240	0.24	-1.5
2,517,698	+		CA265_RS10240	0.26	-0.1
2,517,699	-		CA265_RS10240	0.26	-2.9
2,517,741	+		CA265_RS10240	0.28	+0.0
2,517,745	+		CA265_RS10240	0.28	-0.2
2,517,774	+		CA265_RS10240	0.30	+0.1
2,517,775	-		CA265_RS10240	0.30	-3.7
2,517,800	-		CA265_RS10240	0.31	-2.0
2,517,802	-		CA265_RS10240	0.32	-2.3
2,517,802	-		CA265_RS10240	0.32	-3.0
2,517,864	-		CA265_RS10240	0.35	-3.7
2,517,864	-		CA265_RS10240	0.35	-2.5
2,517,895	+		CA265_RS10240	0.37	+0.5
2,517,895	+		CA265_RS10240	0.37	+0.6
2,517,896	-		CA265_RS10240	0.37	-3.2
2,517,913	+		CA265_RS10240	0.38	+0.8
2,517,962	+		CA265_RS10240	0.41	-0.3
2,517,962	+		CA265_RS10240	0.41	-0.7
2,517,963	-		CA265_RS10240	0.41	-3.5
2,517,991	+		CA265_RS10240	0.42	+0.9
2,517,992	-		CA265_RS10240	0.42	-3.3
2,518,034	-		CA265_RS10240	0.45	-2.1
2,518,080	-		CA265_RS10240	0.47	-1.7
2,518,088	+		CA265_RS10240	0.48	+0.3
2,518,102	+		CA265_RS10240	0.49	+1.8
2,518,127	+		CA265_RS10240	0.50	-0.5
2,518,138	-		CA265_RS10240	0.51	-2.8
2,518,147	+		CA265_RS10240	0.51	+0.0
2,518,149	+		CA265_RS10240	0.51	-0.7
2,518,150	-		CA265_RS10240	0.51	-3.0
2,518,199	+		CA265_RS10240	0.54	-1.2
2,518,200	-		CA265_RS10240	0.54	-3.5
2,518,248	-		CA265_RS10240	0.57	-1.2
2,518,291	-		CA265_RS10240	0.60	-4.4
2,518,384	-		CA265_RS10240	0.65	-2.5
2,518,404	+		CA265_RS10240	0.66	-1.1
2,518,431	+		CA265_RS10240	0.68	-0.7
2,518,458	+		CA265_RS10240	0.69	-0.1
2,518,458	+		CA265_RS10240	0.69	-0.3
2,518,458	+		CA265_RS10240	0.69	-0.7
2,518,459	-		CA265_RS10240	0.69	-2.7
2,518,489	+		CA265_RS10240	0.71	+0.1
2,518,489	+		CA265_RS10240	0.71	-0.4
2,518,490	-		CA265_RS10240	0.71	-3.4
2,518,490	-		CA265_RS10240	0.71	-2.3
2,518,490	-		CA265_RS10240	0.71	-1.8
2,518,494	-		CA265_RS10240	0.71	-3.6
2,518,501	-		CA265_RS10240	0.72	-2.6
2,518,514	-		CA265_RS10240	0.72	-3.2
2,518,546	-		CA265_RS10240	0.74	-3.7
2,518,585	-		CA265_RS10240	0.76	-3.2
2,518,625	-		CA265_RS10240	0.79	-1.5
2,518,646	+		CA265_RS10240	0.80	-0.4
2,518,702	-		CA265_RS10240	0.83	-2.1
2,518,725	+		CA265_RS10240	0.84	-1.1
2,518,796	-		CA265_RS10240	0.88	-2.0
2,518,798	+		CA265_RS10240	0.89	+0.5
2,518,820	-		CA265_RS10240	0.90	-3.5
2,518,863	+				-0.3
2,518,887	+				+0.3
2,518,916	+				-0.6
2,518,944	+				+0.2
2,518,963	-				-1.9
2,518,982	-				-1.8
2,518,986	+				-0.7
2,518,987	-				-1.9
2,519,010	+				-1.2
2,519,064	+				-0.7
2,519,065	-				-2.1
2,519,174	+				+0.1
2,519,185	+				+0.3
2,519,209	+				-0.2
2,519,209	+				-0.1
2,519,239	+				-0.1
2,519,239	+				-0.1
2,519,240	-				-3.1
2,519,291	+				-0.4
2,519,292	-				-2.9
2,519,301	-				-1.2
2,519,389	+		CA265_RS10245	0.12	-0.9
2,519,390	-		CA265_RS10245	0.12	-3.3
2,519,390	-		CA265_RS10245	0.12	-0.9
2,519,390	-		CA265_RS10245	0.12	-3.0
2,519,451	+		CA265_RS10245	0.14	-1.2
2,519,452	-		CA265_RS10245	0.14	-2.6
2,519,513	+		CA265_RS10245	0.16	-0.9
2,519,514	-		CA265_RS10245	0.16	-2.7
2,519,514	-		CA265_RS10245	0.16	-3.1
2,519,514	-		CA265_RS10245	0.16	-2.0
2,519,515	+		CA265_RS10245	0.16	-0.3
2,519,516	-		CA265_RS10245	0.16	-2.2
2,519,629	-		CA265_RS10245	0.20	-2.1
2,519,644	+		CA265_RS10245	0.21	-1.1
2,519,645	-		CA265_RS10245	0.21	-2.9
2,519,645	-		CA265_RS10245	0.21	-1.5
2,519,665	+		CA265_RS10245	0.21	-0.4
2,519,666	-		CA265_RS10245	0.21	-3.8
2,519,672	-		CA265_RS10245	0.21	-1.6
2,519,705	-		CA265_RS10245	0.23	+0.0
2,519,726	+		CA265_RS10245	0.23	-0.5
2,519,727	-		CA265_RS10245	0.23	-2.2
2,519,766	+		CA265_RS10245	0.24	+0.4
2,519,766	+				-1.0
2,519,771	+		CA265_RS10245	0.25	-0.8
2,519,852	+		CA265_RS10245	0.27	+0.1
2,519,857	+		CA265_RS10245	0.27	-0.2
2,519,872	+		CA265_RS10245	0.28	-0.3
2,519,872	+		CA265_RS10245	0.28	+0.2
2,519,972	+		CA265_RS10245	0.31	+0.3
2,519,972	+		CA265_RS10245	0.31	+0.3
2,519,974	-		CA265_RS10245	0.31	+0.5