Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03060

Experiment: NAG (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS03055 and CA265_RS03060 overlap by 1 nucleotidesCA265_RS03060 and CA265_RS03065 are separated by 238 nucleotidesCA265_RS03065 and CA265_RS03070 are separated by 64 nucleotides CA265_RS03055: CA265_RS03055 - two-component sensor histidine kinase, at 758,275 to 759,627 _RS03055 CA265_RS03060: CA265_RS03060 - DNA-binding response regulator, at 759,627 to 760,304 _RS03060 CA265_RS03065: CA265_RS03065 - hypothetical protein, at 760,543 to 761,079 _RS03065 CA265_RS03070: CA265_RS03070 - sec-independent protein translocase TatC, at 761,144 to 761,539 _RS03070 Position (kb) 759 760 761Strain fitness (log2 ratio) -3 -2 -1 0 1at 758.646 kb on + strand, within CA265_RS03055at 758.647 kb on - strand, within CA265_RS03055at 758.697 kb on + strand, within CA265_RS03055at 758.725 kb on + strand, within CA265_RS03055at 758.725 kb on + strand, within CA265_RS03055at 758.793 kb on + strand, within CA265_RS03055at 758.794 kb on - strand, within CA265_RS03055at 758.800 kb on + strand, within CA265_RS03055at 758.800 kb on + strand, within CA265_RS03055at 758.896 kb on - strand, within CA265_RS03055at 758.914 kb on + strand, within CA265_RS03055at 758.914 kb on + strand, within CA265_RS03055at 758.915 kb on - strand, within CA265_RS03055at 758.937 kb on + strand, within CA265_RS03055at 759.037 kb on + strand, within CA265_RS03055at 759.038 kb on - strand, within CA265_RS03055at 759.072 kb on + strand, within CA265_RS03055at 759.085 kb on + strand, within CA265_RS03055at 759.103 kb on + strand, within CA265_RS03055at 759.111 kb on - strand, within CA265_RS03055at 759.115 kb on - strand, within CA265_RS03055at 759.143 kb on - strand, within CA265_RS03055at 759.238 kb on - strand, within CA265_RS03055at 759.304 kb on + strand, within CA265_RS03055at 759.382 kb on + strand, within CA265_RS03055at 759.383 kb on - strand, within CA265_RS03055at 759.383 kb on - strand, within CA265_RS03055at 759.390 kb on - strand, within CA265_RS03055at 759.440 kb on + strand, within CA265_RS03055at 759.440 kb on + strand, within CA265_RS03055at 759.441 kb on - strand, within CA265_RS03055at 759.447 kb on + strand, within CA265_RS03055at 759.486 kb on + strand, within CA265_RS03055at 759.490 kb on - strand, within CA265_RS03055at 759.576 kb on + strandat 759.577 kb on - strandat 759.577 kb on - strandat 759.644 kb on + strandat 759.712 kb on + strand, within CA265_RS03060at 759.712 kb on + strand, within CA265_RS03060at 759.820 kb on + strand, within CA265_RS03060at 759.821 kb on - strand, within CA265_RS03060at 760.008 kb on + strand, within CA265_RS03060at 760.059 kb on - strand, within CA265_RS03060at 760.076 kb on + strand, within CA265_RS03060at 760.077 kb on - strand, within CA265_RS03060at 760.079 kb on + strand, within CA265_RS03060at 760.080 kb on - strand, within CA265_RS03060at 760.080 kb on - strand, within CA265_RS03060at 760.080 kb on - strand, within CA265_RS03060at 760.082 kb on + strand, within CA265_RS03060at 760.082 kb on + strand, within CA265_RS03060at 760.083 kb on - strand, within CA265_RS03060at 760.107 kb on - strand, within CA265_RS03060at 760.143 kb on + strand, within CA265_RS03060at 760.203 kb on + strand, within CA265_RS03060at 760.219 kb on - strand, within CA265_RS03060at 760.220 kb on + strand, within CA265_RS03060at 760.266 kb on + strandat 760.267 kb on - strandat 760.287 kb on + strandat 760.296 kb on + strandat 760.296 kb on + strandat 760.317 kb on - strandat 760.419 kb on - strandat 760.453 kb on - strandat 760.473 kb on - strandat 760.473 kb on - strandat 760.477 kb on + strandat 760.478 kb on - strandat 760.525 kb on + strandat 760.641 kb on + strand, within CA265_RS03065at 760.765 kb on + strand, within CA265_RS03065at 760.777 kb on - strand, within CA265_RS03065at 760.783 kb on + strand, within CA265_RS03065at 760.839 kb on + strand, within CA265_RS03065at 760.840 kb on - strand, within CA265_RS03065at 760.878 kb on + strand, within CA265_RS03065at 760.993 kb on - strand, within CA265_RS03065at 761.001 kb on + strand, within CA265_RS03065at 761.020 kb on + strand, within CA265_RS03065at 761.021 kb on - strand, within CA265_RS03065at 761.099 kb on + strandat 761.236 kb on + strand, within CA265_RS03070at 761.236 kb on + strand, within CA265_RS03070

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
remove
758,646 + CA265_RS03055 0.27 +0.0
758,647 - CA265_RS03055 0.27 +0.3
758,697 + CA265_RS03055 0.31 -2.5
758,725 + CA265_RS03055 0.33 +0.2
758,725 + CA265_RS03055 0.33 +0.6
758,793 + CA265_RS03055 0.38 +0.2
758,794 - CA265_RS03055 0.38 +0.3
758,800 + CA265_RS03055 0.39 +0.2
758,800 + CA265_RS03055 0.39 +0.3
758,896 - CA265_RS03055 0.46 +0.6
758,914 + CA265_RS03055 0.47 +0.0
758,914 + CA265_RS03055 0.47 -0.3
758,915 - CA265_RS03055 0.47 +0.1
758,937 + CA265_RS03055 0.49 +1.0
759,037 + CA265_RS03055 0.56 -0.5
759,038 - CA265_RS03055 0.56 -0.3
759,072 + CA265_RS03055 0.59 +0.4
759,085 + CA265_RS03055 0.60 +0.0
759,103 + CA265_RS03055 0.61 +1.3
759,111 - CA265_RS03055 0.62 -0.1
759,115 - CA265_RS03055 0.62 +0.1
759,143 - CA265_RS03055 0.64 +0.2
759,238 - CA265_RS03055 0.71 +1.1
759,304 + CA265_RS03055 0.76 -0.0
759,382 + CA265_RS03055 0.82 +0.1
759,383 - CA265_RS03055 0.82 +0.2
759,383 - CA265_RS03055 0.82 +0.1
759,390 - CA265_RS03055 0.82 +0.4
759,440 + CA265_RS03055 0.86 +0.7
759,440 + CA265_RS03055 0.86 -0.6
759,441 - CA265_RS03055 0.86 +0.1
759,447 + CA265_RS03055 0.87 +0.1
759,486 + CA265_RS03055 0.90 +0.4
759,490 - CA265_RS03055 0.90 -0.1
759,576 + +0.5
759,577 - +0.2
759,577 - +0.3
759,644 + -0.5
759,712 + CA265_RS03060 0.13 +0.0
759,712 + CA265_RS03060 0.13 -0.6
759,820 + CA265_RS03060 0.28 +0.5
759,821 - CA265_RS03060 0.29 -0.1
760,008 + CA265_RS03060 0.56 +1.4
760,059 - CA265_RS03060 0.64 -0.0
760,076 + CA265_RS03060 0.66 -0.9
760,077 - CA265_RS03060 0.66 +0.2
760,079 + CA265_RS03060 0.67 +0.2
760,080 - CA265_RS03060 0.67 -0.4
760,080 - CA265_RS03060 0.67 +0.1
760,080 - CA265_RS03060 0.67 -3.2
760,082 + CA265_RS03060 0.67 -0.2
760,082 + CA265_RS03060 0.67 -0.5
760,083 - CA265_RS03060 0.67 +0.4
760,107 - CA265_RS03060 0.71 +0.6
760,143 + CA265_RS03060 0.76 -0.3
760,203 + CA265_RS03060 0.85 -1.0
760,219 - CA265_RS03060 0.87 +0.0
760,220 + CA265_RS03060 0.87 +0.8
760,266 + +0.4
760,267 - -0.0
760,287 + +0.6
760,296 + +0.7
760,296 + +0.4
760,317 - +0.3
760,419 - +0.3
760,453 - -0.5
760,473 - -2.2
760,473 - -1.0
760,477 + +0.3
760,478 - +0.5
760,525 + +0.4
760,641 + CA265_RS03065 0.18 -0.5
760,765 + CA265_RS03065 0.41 +0.1
760,777 - CA265_RS03065 0.44 +0.7
760,783 + CA265_RS03065 0.45 +0.3
760,839 + CA265_RS03065 0.55 +0.1
760,840 - CA265_RS03065 0.55 +0.5
760,878 + CA265_RS03065 0.62 -0.3
760,993 - CA265_RS03065 0.84 +1.6
761,001 + CA265_RS03065 0.85 +0.1
761,020 + CA265_RS03065 0.89 -0.4
761,021 - CA265_RS03065 0.89 -1.2
761,099 + +0.1
761,236 + CA265_RS03070 0.23 +1.3
761,236 + CA265_RS03070 0.23 -1.1

Or see this region's nucleotide sequence