Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02195 and CA265_RS02200 are separated by 111 nucleotides CA265_RS02200 and CA265_RS02205 are separated by 218 nucleotides
CA265_RS02195: CA265_RS02195 - 6-phosphofructokinase, at 555,200 to 556,186
_RS02195
CA265_RS02200: CA265_RS02200 - NUDIX hydrolase, at 556,298 to 556,987
_RS02200
CA265_RS02205: CA265_RS02205 - N-acetylglucosamine kinase, at 557,206 to 558,066
_RS02205
Position (kb) 556
557 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 556.278 kb on + strand at 556.320 kb on + strand at 556.461 kb on + strand, within CA265_RS02200 at 556.515 kb on - strand, within CA265_RS02200 at 556.526 kb on + strand, within CA265_RS02200 at 556.527 kb on - strand, within CA265_RS02200 at 556.569 kb on + strand, within CA265_RS02200 at 556.584 kb on - strand, within CA265_RS02200 at 556.586 kb on + strand, within CA265_RS02200 at 556.637 kb on + strand, within CA265_RS02200 at 556.719 kb on + strand, within CA265_RS02200 at 556.797 kb on + strand, within CA265_RS02200 at 556.798 kb on - strand, within CA265_RS02200 at 556.809 kb on - strand, within CA265_RS02200 at 556.850 kb on - strand, within CA265_RS02200 at 556.879 kb on - strand, within CA265_RS02200 at 556.929 kb on + strand at 556.948 kb on + strand at 556.949 kb on - strand at 556.953 kb on - strand at 557.097 kb on + strand at 557.098 kb on - strand at 557.107 kb on + strand at 557.108 kb on - strand at 557.114 kb on + strand at 557.194 kb on + strand at 557.253 kb on + strand at 557.549 kb on + strand, within CA265_RS02205 at 557.553 kb on + strand, within CA265_RS02205 at 557.589 kb on - strand, within CA265_RS02205 at 557.877 kb on - strand, within CA265_RS02205 at 557.942 kb on - strand, within CA265_RS02205
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 556,278 + +0.2 556,320 + -0.4 556,461 + CA265_RS02200 0.24 -0.4 556,515 - CA265_RS02200 0.31 -1.4 556,526 + CA265_RS02200 0.33 -1.9 556,527 - CA265_RS02200 0.33 -2.8 556,569 + CA265_RS02200 0.39 +0.6 556,584 - CA265_RS02200 0.41 +0.6 556,586 + CA265_RS02200 0.42 +0.5 556,637 + CA265_RS02200 0.49 -0.4 556,719 + CA265_RS02200 0.61 -1.5 556,797 + CA265_RS02200 0.72 -1.0 556,798 - CA265_RS02200 0.72 -0.6 556,809 - CA265_RS02200 0.74 -0.3 556,850 - CA265_RS02200 0.80 -0.9 556,879 - CA265_RS02200 0.84 -1.4 556,929 + -2.8 556,948 + +0.9 556,949 - -0.2 556,953 - -0.2 557,097 + -1.0 557,098 - +0.4 557,107 + -0.3 557,108 - -0.2 557,114 + +0.0 557,194 + +1.5 557,253 + -0.4 557,549 + CA265_RS02205 0.40 +0.1 557,553 + CA265_RS02205 0.40 -0.7 557,589 - CA265_RS02205 0.44 -1.5 557,877 - CA265_RS02205 0.78 -1.5 557,942 - CA265_RS02205 0.85 -0.7
Or see this region's nucleotide sequence