Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35505

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS35500 and BPHYT_RS35505 are separated by 82 nucleotidesBPHYT_RS35505 and BPHYT_RS35510 are separated by 55 nucleotides BPHYT_RS35500: BPHYT_RS35500 - major facilitator transporter, at 3,565,185 to 3,566,621 _RS35500 BPHYT_RS35505: BPHYT_RS35505 - short-chain dehydrogenase, at 3,566,704 to 3,567,474 _RS35505 BPHYT_RS35510: BPHYT_RS35510 - hydrolase, at 3,567,530 to 3,568,384 _RS35510 Position (kb) 3566 3567 3568Strain fitness (log2 ratio) -1 0 1at 3565.881 kb on - strand, within BPHYT_RS35500at 3566.653 kb on - strandat 3566.901 kb on - strand, within BPHYT_RS35505at 3567.187 kb on + strand, within BPHYT_RS35505at 3567.187 kb on + strand, within BPHYT_RS35505at 3567.814 kb on - strand, within BPHYT_RS35510at 3567.994 kb on - strand, within BPHYT_RS35510at 3568.265 kb on - strand, within BPHYT_RS35510at 3568.265 kb on - strand, within BPHYT_RS35510

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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3,565,881 - BPHYT_RS35500 0.48 -0.1
3,566,653 - +0.7
3,566,901 - BPHYT_RS35505 0.26 +0.4
3,567,187 + BPHYT_RS35505 0.63 -0.4
3,567,187 + BPHYT_RS35505 0.63 -0.4
3,567,814 - BPHYT_RS35510 0.33 -0.2
3,567,994 - BPHYT_RS35510 0.54 -0.2
3,568,265 - BPHYT_RS35510 0.86 -0.1
3,568,265 - BPHYT_RS35510 0.86 +0.1

Or see this region's nucleotide sequence