Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34825

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS34820 and BPHYT_RS34825 are separated by 10 nucleotidesBPHYT_RS34825 and BPHYT_RS34830 are separated by 343 nucleotides BPHYT_RS34820: BPHYT_RS34820 - radical SAM protein, at 3,417,196 to 3,418,350 _RS34820 BPHYT_RS34825: BPHYT_RS34825 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 3,418,361 to 3,419,305 _RS34825 BPHYT_RS34830: BPHYT_RS34830 - phytoene synthase, at 3,419,649 to 3,420,515 _RS34830 Position (kb) 3418 3419 3420Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3418.481 kb on + strand, within BPHYT_RS34825at 3418.482 kb on - strand, within BPHYT_RS34825at 3418.588 kb on - strand, within BPHYT_RS34825at 3418.643 kb on - strand, within BPHYT_RS34825at 3418.643 kb on - strandat 3418.723 kb on - strand, within BPHYT_RS34825at 3418.827 kb on + strand, within BPHYT_RS34825at 3418.828 kb on - strand, within BPHYT_RS34825at 3418.828 kb on - strand, within BPHYT_RS34825at 3418.828 kb on - strand, within BPHYT_RS34825at 3418.981 kb on - strand, within BPHYT_RS34825at 3418.981 kb on - strand, within BPHYT_RS34825at 3419.205 kb on + strand, within BPHYT_RS34825at 3419.205 kb on + strand, within BPHYT_RS34825at 3419.206 kb on - strand, within BPHYT_RS34825at 3419.206 kb on - strand, within BPHYT_RS34825at 3419.206 kb on - strand, within BPHYT_RS34825at 3419.206 kb on - strand, within BPHYT_RS34825at 3419.228 kb on + strandat 3419.305 kb on + strandat 3419.306 kb on - strandat 3419.376 kb on + strandat 3419.376 kb on + strandat 3419.377 kb on - strandat 3419.381 kb on - strandat 3419.437 kb on + strandat 3419.592 kb on + strandat 3419.592 kb on + strandat 3419.593 kb on - strandat 3419.593 kb on - strandat 3419.593 kb on - strandat 3419.593 kb on - strandat 3419.593 kb on - strandat 3419.596 kb on + strandat 3419.597 kb on - strandat 3419.597 kb on - strandat 3419.726 kb on + strandat 3419.727 kb on - strandat 3419.727 kb on - strandat 3419.727 kb on - strandat 3419.727 kb on - strandat 3419.727 kb on - strandat 3419.731 kb on - strandat 3419.903 kb on + strand, within BPHYT_RS34830at 3419.903 kb on + strand, within BPHYT_RS34830at 3419.904 kb on - strand, within BPHYT_RS34830at 3419.904 kb on - strand, within BPHYT_RS34830at 3419.904 kb on - strand, within BPHYT_RS34830at 3419.970 kb on + strand, within BPHYT_RS34830at 3419.971 kb on - strand, within BPHYT_RS34830at 3420.156 kb on + strand, within BPHYT_RS34830at 3420.173 kb on + strand, within BPHYT_RS34830at 3420.174 kb on - strand, within BPHYT_RS34830

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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3,418,481 + BPHYT_RS34825 0.13 -3.4
3,418,482 - BPHYT_RS34825 0.13 -1.5
3,418,588 - BPHYT_RS34825 0.24 -1.3
3,418,643 - BPHYT_RS34825 0.30 -1.6
3,418,643 - +0.7
3,418,723 - BPHYT_RS34825 0.38 -1.2
3,418,827 + BPHYT_RS34825 0.49 -1.6
3,418,828 - BPHYT_RS34825 0.49 -1.0
3,418,828 - BPHYT_RS34825 0.49 -1.5
3,418,828 - BPHYT_RS34825 0.49 -1.6
3,418,981 - BPHYT_RS34825 0.66 -1.2
3,418,981 - BPHYT_RS34825 0.66 -1.9
3,419,205 + BPHYT_RS34825 0.89 -0.8
3,419,205 + BPHYT_RS34825 0.89 -1.3
3,419,206 - BPHYT_RS34825 0.89 -1.3
3,419,206 - BPHYT_RS34825 0.89 -2.1
3,419,206 - BPHYT_RS34825 0.89 -0.9
3,419,206 - BPHYT_RS34825 0.89 -1.0
3,419,228 + -1.3
3,419,305 + -3.3
3,419,306 - -1.5
3,419,376 + -4.0
3,419,376 + -2.6
3,419,377 - -0.4
3,419,381 - -0.5
3,419,437 + -2.1
3,419,592 + -0.6
3,419,592 + +1.1
3,419,593 - +0.1
3,419,593 - -0.2
3,419,593 - +0.2
3,419,593 - +1.4
3,419,593 - -0.2
3,419,596 + +0.1
3,419,597 - +0.0
3,419,597 - +0.5
3,419,726 + +0.2
3,419,727 - +0.1
3,419,727 - -0.8
3,419,727 - -0.0
3,419,727 - -0.3
3,419,727 - -0.1
3,419,731 - -0.8
3,419,903 + BPHYT_RS34830 0.29 -0.1
3,419,903 + BPHYT_RS34830 0.29 +0.0
3,419,904 - BPHYT_RS34830 0.29 -0.3
3,419,904 - BPHYT_RS34830 0.29 +0.4
3,419,904 - BPHYT_RS34830 0.29 -0.4
3,419,970 + BPHYT_RS34830 0.37 -0.3
3,419,971 - BPHYT_RS34830 0.37 -1.1
3,420,156 + BPHYT_RS34830 0.58 -0.5
3,420,173 + BPHYT_RS34830 0.60 -0.2
3,420,174 - BPHYT_RS34830 0.61 +1.3

Or see this region's nucleotide sequence