Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30635

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30630 and BPHYT_RS30635 are separated by 156 nucleotidesBPHYT_RS30635 and BPHYT_RS30640 are separated by 48 nucleotides BPHYT_RS30630: BPHYT_RS30630 - LuxR family transcriptional regulator, at 2,429,138 to 2,429,941 _RS30630 BPHYT_RS30635: BPHYT_RS30635 - D-aminopeptidase, at 2,430,098 to 2,431,225 _RS30635 BPHYT_RS30640: BPHYT_RS30640 - ABC transporter substrate-binding protein, at 2,431,274 to 2,432,383 _RS30640 Position (kb) 2430 2431 2432Strain fitness (log2 ratio) -2 -1 0 1at 2429.964 kb on - strandat 2430.285 kb on - strand, within BPHYT_RS30635at 2430.461 kb on - strand, within BPHYT_RS30635at 2431.536 kb on - strand, within BPHYT_RS30640at 2431.725 kb on + strand, within BPHYT_RS30640at 2431.726 kb on - strand, within BPHYT_RS30640at 2431.870 kb on + strand, within BPHYT_RS30640at 2431.871 kb on - strand, within BPHYT_RS30640at 2432.162 kb on + strand, within BPHYT_RS30640

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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2,429,964 - -0.7
2,430,285 - BPHYT_RS30635 0.17 -0.7
2,430,461 - BPHYT_RS30635 0.32 -0.7
2,431,536 - BPHYT_RS30640 0.24 -1.8
2,431,725 + BPHYT_RS30640 0.41 -0.1
2,431,726 - BPHYT_RS30640 0.41 +1.0
2,431,870 + BPHYT_RS30640 0.54 -0.4
2,431,871 - BPHYT_RS30640 0.54 +1.0
2,432,162 + BPHYT_RS30640 0.80 -0.1

Or see this region's nucleotide sequence