Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS30480 and BPHYT_RS30485 are separated by 101 nucleotides BPHYT_RS30485 and BPHYT_RS30490 are separated by 65 nucleotides BPHYT_RS30490 and BPHYT_RS30495 are separated by 4 nucleotides
BPHYT_RS30480: BPHYT_RS30480 - LysR family transcriptional regulator, at 2,397,996 to 2,398,967
_RS30480
BPHYT_RS30485: BPHYT_RS30485 - ABC transporter ATP-binding protein, at 2,399,069 to 2,400,151
_RS30485
BPHYT_RS30490: BPHYT_RS30490 - 2-haloalkanoic acid dehalogenase, at 2,400,217 to 2,400,930
_RS30490
BPHYT_RS30495: BPHYT_RS30495 - oxidoreductase, at 2,400,935 to 2,402,272
_RS30495
Position (kb) 2399
2400
2401 Strain fitness (log2 ratio) -2
-1
0
1 at 2398.867 kb on + strand, within BPHYT_RS30480 at 2398.867 kb on + strand, within BPHYT_RS30480 at 2398.868 kb on - strand, within BPHYT_RS30480 at 2398.868 kb on - strand, within BPHYT_RS30480 at 2398.868 kb on - strand, within BPHYT_RS30480 at 2398.869 kb on + strand, within BPHYT_RS30480 at 2399.027 kb on - strand at 2399.648 kb on + strand, within BPHYT_RS30485 at 2400.358 kb on + strand, within BPHYT_RS30490
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 2,398,867 + BPHYT_RS30480 0.90 +0.1 2,398,867 + BPHYT_RS30480 0.90 +1.0 2,398,868 - BPHYT_RS30480 0.90 -2.3 2,398,868 - BPHYT_RS30480 0.90 -1.1 2,398,868 - BPHYT_RS30480 0.90 +0.4 2,398,869 + BPHYT_RS30480 0.90 -0.1 2,399,027 - +0.3 2,399,648 + BPHYT_RS30485 0.53 -1.2 2,400,358 + BPHYT_RS30490 0.20 -0.4
Or see this region's nucleotide sequence