Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27230

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27220 and BPHYT_RS27225 are separated by 83 nucleotidesBPHYT_RS27225 and BPHYT_RS27230 are separated by 119 nucleotidesBPHYT_RS27230 and BPHYT_RS27235 are separated by 186 nucleotidesBPHYT_RS27235 and BPHYT_RS27240 are separated by 142 nucleotides BPHYT_RS27220: BPHYT_RS27220 - galactarate dehydratase, at 1,684,059 to 1,685,585 _RS27220 BPHYT_RS27225: BPHYT_RS27225 - hypothetical protein, at 1,685,669 to 1,685,902 _RS27225 BPHYT_RS27230: BPHYT_RS27230 - hypothetical protein, at 1,686,022 to 1,686,363 _RS27230 BPHYT_RS27235: BPHYT_RS27235 - hypothetical protein, at 1,686,550 to 1,686,906 _RS27235 BPHYT_RS27240: BPHYT_RS27240 - N-ethylmaleimide reductase, at 1,687,049 to 1,688,152 _RS27240 Position (kb) 1686 1687Strain fitness (log2 ratio) -1 0 1at 1686.010 kb on + strandat 1686.011 kb on - strandat 1686.076 kb on + strand, within BPHYT_RS27230at 1686.362 kb on - strandat 1687.360 kb on - strand, within BPHYT_RS27240at 1687.360 kb on - strand, within BPHYT_RS27240

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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1,686,010 + -1.4
1,686,011 - +0.3
1,686,076 + BPHYT_RS27230 0.16 -0.9
1,686,362 - -0.1
1,687,360 - BPHYT_RS27240 0.28 +0.3
1,687,360 - BPHYT_RS27240 0.28 -0.1

Or see this region's nucleotide sequence