Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22535 and BPHYT_RS22540 overlap by 8 nucleotides BPHYT_RS22540 and BPHYT_RS22545 are separated by 155 nucleotides BPHYT_RS22545 and BPHYT_RS22550 are separated by 60 nucleotides
BPHYT_RS22535: BPHYT_RS22535 - methionine ABC transporter ATP-binding protein, at 617,368 to 618,528
_RS22535
BPHYT_RS22540: BPHYT_RS22540 - metal ABC transporter permease, at 618,521 to 619,177
_RS22540
BPHYT_RS22545: BPHYT_RS22545 - acyl-CoA dehydrogenase, at 619,333 to 620,535
_RS22545
BPHYT_RS22550: BPHYT_RS22550 - manganese transporter, at 620,596 to 621,924
_RS22550
Position (kb) 619
620
621 Strain fitness (log2 ratio) -2
-1
0
1
2 at 618.787 kb on - strand, within BPHYT_RS22540 at 618.976 kb on + strand, within BPHYT_RS22540 at 619.181 kb on + strand at 619.181 kb on + strand at 619.250 kb on - strand at 619.250 kb on - strand at 619.257 kb on + strand at 619.257 kb on + strand at 619.257 kb on + strand at 619.261 kb on + strand at 619.561 kb on + strand, within BPHYT_RS22545 at 619.562 kb on - strand, within BPHYT_RS22545 at 619.562 kb on - strand, within BPHYT_RS22545 at 620.069 kb on + strand, within BPHYT_RS22545 at 620.138 kb on - strand, within BPHYT_RS22545 at 620.527 kb on + strand at 620.528 kb on - strand at 620.738 kb on - strand, within BPHYT_RS22550 at 620.739 kb on + strand, within BPHYT_RS22550 at 620.853 kb on + strand, within BPHYT_RS22550 at 621.145 kb on + strand, within BPHYT_RS22550 at 621.145 kb on + strand, within BPHYT_RS22550 at 621.146 kb on - strand, within BPHYT_RS22550 at 621.242 kb on - strand, within BPHYT_RS22550 at 621.290 kb on - strand at 621.401 kb on + strand, within BPHYT_RS22550 at 621.487 kb on + strand, within BPHYT_RS22550 at 621.487 kb on + strand, within BPHYT_RS22550 at 621.487 kb on + strand, within BPHYT_RS22550 at 621.488 kb on - strand, within BPHYT_RS22550 at 621.489 kb on + strand, within BPHYT_RS22550 at 621.489 kb on + strand, within BPHYT_RS22550 at 621.490 kb on - strand, within BPHYT_RS22550
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 618,787 - BPHYT_RS22540 0.40 +0.7 618,976 + BPHYT_RS22540 0.69 -0.5 619,181 + +0.1 619,181 + +0.1 619,250 - +0.5 619,250 - -0.1 619,257 + -0.5 619,257 + -0.1 619,257 + -0.4 619,261 + +2.0 619,561 + BPHYT_RS22545 0.19 +0.2 619,562 - BPHYT_RS22545 0.19 +0.4 619,562 - BPHYT_RS22545 0.19 -0.4 620,069 + BPHYT_RS22545 0.61 -0.5 620,138 - BPHYT_RS22545 0.67 -0.6 620,527 + -0.4 620,528 - -0.0 620,738 - BPHYT_RS22550 0.11 -0.3 620,739 + BPHYT_RS22550 0.11 -0.3 620,853 + BPHYT_RS22550 0.19 -0.7 621,145 + BPHYT_RS22550 0.41 -0.7 621,145 + BPHYT_RS22550 0.41 -0.0 621,146 - BPHYT_RS22550 0.41 -0.4 621,242 - BPHYT_RS22550 0.49 +0.1 621,290 - +1.4 621,401 + BPHYT_RS22550 0.61 +0.1 621,487 + BPHYT_RS22550 0.67 +0.3 621,487 + BPHYT_RS22550 0.67 +0.7 621,487 + BPHYT_RS22550 0.67 -2.5 621,488 - BPHYT_RS22550 0.67 +0.1 621,489 + BPHYT_RS22550 0.67 -0.0 621,489 + BPHYT_RS22550 0.67 +0.1 621,490 - BPHYT_RS22550 0.67 -0.2
Or see this region's nucleotide sequence