Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21360

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21355 and BPHYT_RS21360 are separated by 221 nucleotidesBPHYT_RS21360 and BPHYT_RS21365 are separated by 127 nucleotides BPHYT_RS21355: BPHYT_RS21355 - major facilitator transporter, at 349,284 to 350,687 _RS21355 BPHYT_RS21360: BPHYT_RS21360 - gamma-glutamyltranspeptidase, at 350,909 to 352,642 _RS21360 BPHYT_RS21365: BPHYT_RS21365 - serine protease, at 352,770 to 353,813 _RS21365 Position (kb) 350 351 352 353Strain fitness (log2 ratio) -2 -1 0 1at 349.988 kb on - strand, within BPHYT_RS21355at 350.013 kb on + strand, within BPHYT_RS21355at 350.189 kb on + strand, within BPHYT_RS21355at 350.190 kb on - strand, within BPHYT_RS21355at 350.313 kb on + strand, within BPHYT_RS21355at 350.685 kb on + strandat 350.813 kb on + strandat 350.818 kb on + strandat 350.818 kb on + strandat 350.819 kb on - strandat 350.819 kb on - strandat 350.819 kb on - strandat 350.819 kb on - strandat 350.820 kb on + strandat 350.820 kb on + strandat 350.821 kb on - strandat 350.821 kb on - strandat 350.853 kb on + strandat 350.854 kb on - strandat 350.873 kb on + strandat 350.873 kb on + strandat 350.929 kb on + strandat 351.209 kb on + strand, within BPHYT_RS21360at 351.209 kb on + strand, within BPHYT_RS21360at 351.209 kb on + strand, within BPHYT_RS21360at 351.210 kb on - strand, within BPHYT_RS21360at 351.210 kb on - strand, within BPHYT_RS21360at 351.210 kb on - strand, within BPHYT_RS21360at 351.278 kb on + strand, within BPHYT_RS21360at 351.278 kb on + strand, within BPHYT_RS21360at 351.278 kb on + strand, within BPHYT_RS21360at 351.278 kb on + strand, within BPHYT_RS21360at 351.279 kb on - strand, within BPHYT_RS21360at 351.394 kb on + strand, within BPHYT_RS21360at 351.395 kb on - strand, within BPHYT_RS21360at 351.518 kb on - strand, within BPHYT_RS21360at 351.521 kb on + strand, within BPHYT_RS21360at 351.521 kb on + strand, within BPHYT_RS21360at 351.615 kb on - strand, within BPHYT_RS21360at 351.692 kb on + strand, within BPHYT_RS21360at 351.693 kb on - strand, within BPHYT_RS21360at 351.693 kb on - strand, within BPHYT_RS21360at 351.854 kb on + strand, within BPHYT_RS21360at 351.854 kb on + strand, within BPHYT_RS21360at 351.855 kb on - strand, within BPHYT_RS21360at 351.855 kb on - strand, within BPHYT_RS21360at 351.929 kb on + strand, within BPHYT_RS21360at 351.929 kb on + strand, within BPHYT_RS21360at 351.931 kb on + strandat 351.965 kb on + strand, within BPHYT_RS21360at 351.965 kb on + strand, within BPHYT_RS21360at 351.965 kb on + strand, within BPHYT_RS21360at 351.965 kb on + strand, within BPHYT_RS21360at 351.967 kb on + strand, within BPHYT_RS21360at 352.111 kb on + strand, within BPHYT_RS21360at 352.115 kb on + strand, within BPHYT_RS21360at 352.115 kb on + strand, within BPHYT_RS21360at 352.116 kb on - strand, within BPHYT_RS21360at 352.116 kb on - strand, within BPHYT_RS21360at 352.116 kb on - strand, within BPHYT_RS21360at 352.116 kb on - strand, within BPHYT_RS21360at 352.219 kb on + strand, within BPHYT_RS21360at 352.219 kb on + strand, within BPHYT_RS21360at 352.220 kb on - strand, within BPHYT_RS21360at 352.317 kb on + strand, within BPHYT_RS21360at 352.388 kb on + strand, within BPHYT_RS21360at 352.394 kb on + strand, within BPHYT_RS21360at 352.479 kb on - strandat 352.649 kb on + strandat 352.740 kb on + strandat 352.908 kb on - strand, within BPHYT_RS21365at 352.925 kb on + strand, within BPHYT_RS21365at 352.926 kb on - strandat 352.986 kb on + strand, within BPHYT_RS21365at 353.014 kb on + strand, within BPHYT_RS21365at 353.065 kb on + strand, within BPHYT_RS21365at 353.066 kb on - strand, within BPHYT_RS21365at 353.066 kb on - strand, within BPHYT_RS21365at 353.066 kb on - strand, within BPHYT_RS21365at 353.172 kb on - strand, within BPHYT_RS21365at 353.261 kb on - strand, within BPHYT_RS21365at 353.310 kb on + strand, within BPHYT_RS21365at 353.311 kb on - strand, within BPHYT_RS21365at 353.311 kb on - strand, within BPHYT_RS21365at 353.514 kb on - strand, within BPHYT_RS21365at 353.544 kb on - strand, within BPHYT_RS21365at 353.558 kb on - strand, within BPHYT_RS21365

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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349,988 - BPHYT_RS21355 0.50 +0.1
350,013 + BPHYT_RS21355 0.52 -0.5
350,189 + BPHYT_RS21355 0.64 -0.5
350,190 - BPHYT_RS21355 0.65 +0.0
350,313 + BPHYT_RS21355 0.73 +0.5
350,685 + -0.1
350,813 + +0.3
350,818 + +0.7
350,818 + -0.5
350,819 - -0.1
350,819 - -0.3
350,819 - -0.9
350,819 - -0.6
350,820 + -0.1
350,820 + -0.3
350,821 - -0.3
350,821 - -0.0
350,853 + +0.4
350,854 - -0.4
350,873 + -0.3
350,873 + +0.0
350,929 + -0.3
351,209 + BPHYT_RS21360 0.17 -0.2
351,209 + BPHYT_RS21360 0.17 -0.1
351,209 + BPHYT_RS21360 0.17 -0.9
351,210 - BPHYT_RS21360 0.17 +0.3
351,210 - BPHYT_RS21360 0.17 -0.1
351,210 - BPHYT_RS21360 0.17 -0.3
351,278 + BPHYT_RS21360 0.21 +1.4
351,278 + BPHYT_RS21360 0.21 -0.1
351,278 + BPHYT_RS21360 0.21 -0.8
351,278 + BPHYT_RS21360 0.21 +0.2
351,279 - BPHYT_RS21360 0.21 +0.4
351,394 + BPHYT_RS21360 0.28 +1.0
351,395 - BPHYT_RS21360 0.28 -0.3
351,518 - BPHYT_RS21360 0.35 -0.1
351,521 + BPHYT_RS21360 0.35 -2.0
351,521 + BPHYT_RS21360 0.35 -0.7
351,615 - BPHYT_RS21360 0.41 -0.1
351,692 + BPHYT_RS21360 0.45 -0.5
351,693 - BPHYT_RS21360 0.45 +0.4
351,693 - BPHYT_RS21360 0.45 -2.1
351,854 + BPHYT_RS21360 0.54 -0.4
351,854 + BPHYT_RS21360 0.54 +0.4
351,855 - BPHYT_RS21360 0.55 -0.4
351,855 - BPHYT_RS21360 0.55 +0.4
351,929 + BPHYT_RS21360 0.59 -0.7
351,929 + BPHYT_RS21360 0.59 -0.3
351,931 + +1.3
351,965 + BPHYT_RS21360 0.61 -1.1
351,965 + BPHYT_RS21360 0.61 +0.1
351,965 + BPHYT_RS21360 0.61 -0.0
351,965 + BPHYT_RS21360 0.61 -0.0
351,967 + BPHYT_RS21360 0.61 -0.0
352,111 + BPHYT_RS21360 0.69 -0.4
352,115 + BPHYT_RS21360 0.70 -0.2
352,115 + BPHYT_RS21360 0.70 -0.6
352,116 - BPHYT_RS21360 0.70 -0.3
352,116 - BPHYT_RS21360 0.70 +0.8
352,116 - BPHYT_RS21360 0.70 -0.5
352,116 - BPHYT_RS21360 0.70 +0.1
352,219 + BPHYT_RS21360 0.76 +1.1
352,219 + BPHYT_RS21360 0.76 -0.4
352,220 - BPHYT_RS21360 0.76 +0.4
352,317 + BPHYT_RS21360 0.81 -0.1
352,388 + BPHYT_RS21360 0.85 +0.2
352,394 + BPHYT_RS21360 0.86 -0.4
352,479 - +0.4
352,649 + +0.4
352,740 + -0.4
352,908 - BPHYT_RS21365 0.13 -0.4
352,925 + BPHYT_RS21365 0.15 -0.3
352,926 - +1.0
352,986 + BPHYT_RS21365 0.21 +0.2
353,014 + BPHYT_RS21365 0.23 -0.6
353,065 + BPHYT_RS21365 0.28 -0.0
353,066 - BPHYT_RS21365 0.28 -1.0
353,066 - BPHYT_RS21365 0.28 +0.4
353,066 - BPHYT_RS21365 0.28 -0.7
353,172 - BPHYT_RS21365 0.39 -0.2
353,261 - BPHYT_RS21365 0.47 +0.6
353,310 + BPHYT_RS21365 0.52 +0.0
353,311 - BPHYT_RS21365 0.52 +0.7
353,311 - BPHYT_RS21365 0.52 -0.1
353,514 - BPHYT_RS21365 0.71 -0.3
353,544 - BPHYT_RS21365 0.74 -1.4
353,558 - BPHYT_RS21365 0.75 +0.1

Or see this region's nucleotide sequence