Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19360

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS19355 and BPHYT_RS19360 are separated by 736 nucleotidesBPHYT_RS19360 and BPHYT_RS19365 are separated by 474 nucleotides BPHYT_RS19355: BPHYT_RS19355 - bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase, at 4,348,896 to 4,352,825 _RS19355 BPHYT_RS19360: BPHYT_RS19360 - primosome assembly protein PriA, at 4,353,562 to 4,355,799 _RS19360 BPHYT_RS19365: BPHYT_RS19365 - uroporphyrinogen decarboxylase, at 4,356,274 to 4,357,374 _RS19365 Position (kb) 4353 4354 4355 4356Strain fitness (log2 ratio) -2 -1 0 1at 4352.885 kb on + strandat 4353.005 kb on + strandat 4353.006 kb on - strandat 4353.035 kb on + strandat 4353.036 kb on - strandat 4353.036 kb on - strandat 4353.067 kb on + strandat 4353.077 kb on - strandat 4353.157 kb on + strandat 4353.158 kb on - strandat 4353.158 kb on - strandat 4353.203 kb on - strandat 4353.203 kb on - strandat 4353.459 kb on - strandat 4353.459 kb on - strandat 4353.471 kb on + strandat 4353.471 kb on + strandat 4353.472 kb on - strandat 4353.472 kb on - strandat 4353.472 kb on - strandat 4353.474 kb on - strandat 4353.533 kb on + strandat 4353.534 kb on - strandat 4353.534 kb on - strandat 4353.563 kb on + strandat 4353.563 kb on + strandat 4353.563 kb on + strandat 4353.564 kb on - strandat 4353.564 kb on - strandat 4353.564 kb on - strandat 4353.564 kb on - strandat 4353.564 kb on - strandat 4353.564 kb on - strandat 4355.885 kb on - strandat 4355.885 kb on - strandat 4356.077 kb on + strandat 4356.078 kb on - strandat 4356.078 kb on - strandat 4356.156 kb on + strandat 4356.157 kb on - strandat 4356.202 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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4,352,885 + -0.0
4,353,005 + +0.1
4,353,006 - -0.4
4,353,035 + -0.3
4,353,036 - +0.1
4,353,036 - +0.4
4,353,067 + -0.2
4,353,077 - +0.1
4,353,157 + +0.1
4,353,158 - +0.3
4,353,158 - +0.3
4,353,203 - +0.1
4,353,203 - +0.1
4,353,459 - +0.2
4,353,459 - -1.8
4,353,471 + +0.0
4,353,471 + +0.3
4,353,472 - -0.5
4,353,472 - -0.2
4,353,472 - -0.1
4,353,474 - -0.2
4,353,533 + +0.9
4,353,534 - -0.6
4,353,534 - -0.1
4,353,563 + -0.0
4,353,563 + -0.7
4,353,563 + +0.3
4,353,564 - +0.4
4,353,564 - -1.6
4,353,564 - +0.1
4,353,564 - -0.2
4,353,564 - +0.3
4,353,564 - -0.1
4,355,885 - -2.0
4,355,885 - -0.3
4,356,077 + -1.5
4,356,078 - -1.0
4,356,078 - +1.0
4,356,156 + -0.4
4,356,157 - +0.5
4,356,202 - -0.4

Or see this region's nucleotide sequence