Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16775

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS16770 and BPHYT_RS16775 are separated by 232 nucleotidesBPHYT_RS16775 and BPHYT_RS16780 are separated by 54 nucleotidesBPHYT_RS16780 and BPHYT_RS16785 are separated by 91 nucleotides BPHYT_RS16770: BPHYT_RS16770 - gamma-glutamyl phosphate reductase, at 3,805,810 to 3,807,081 _RS16770 BPHYT_RS16775: BPHYT_RS16775 - DNA polymerase III subunit delta, at 3,807,314 to 3,808,432 _RS16775 BPHYT_RS16780: BPHYT_RS16780 - hypothetical protein, at 3,808,487 to 3,809,038 _RS16780 BPHYT_RS16785: BPHYT_RS16785 - leucyl-tRNA synthetase, at 3,809,130 to 3,811,721 _RS16785 Position (kb) 3807 3808 3809Strain fitness (log2 ratio) -1 0 1at 3807.153 kb on + strandat 3807.153 kb on + strandat 3807.205 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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3,807,153 + +0.1
3,807,153 + +0.4
3,807,205 + +0.8

Or see this region's nucleotide sequence