Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS16605 and BPHYT_RS16610 are separated by 197 nucleotides BPHYT_RS16610 and BPHYT_RS16615 are separated by 160 nucleotides BPHYT_RS16615 and BPHYT_RS16620 are separated by 122 nucleotides
BPHYT_RS16605: BPHYT_RS16605 - crossover junction endodeoxyribonuclease RuvC, at 3,763,132 to 3,763,674
_RS16605
BPHYT_RS16610: BPHYT_RS16610 - amino acid transporter, at 3,763,872 to 3,764,504
_RS16610
BPHYT_RS16615: BPHYT_RS16615 - holliday junction ATP-dependent DNA helicase RuvA, at 3,764,665 to 3,765,246
_RS16615
BPHYT_RS16620: BPHYT_RS16620 - holliday junction ATP-dependent DNA helicase RuvB, at 3,765,369 to 3,766,433
_RS16620
Position (kb)
3764
3765
3766 Strain fitness (log2 ratio)
-2
-1
0
1 at 3763.839 kb on + strand at 3763.840 kb on - strand at 3763.840 kb on - strand at 3763.933 kb on + strand at 3763.933 kb on + strand at 3763.934 kb on - strand at 3764.249 kb on - strand at 3764.258 kb on - strand, within BPHYT_RS16610 at 3764.258 kb on - strand, within BPHYT_RS16610 at 3764.287 kb on + strand, within BPHYT_RS16610 at 3764.287 kb on + strand, within BPHYT_RS16610 at 3764.287 kb on + strand, within BPHYT_RS16610 at 3764.350 kb on + strand, within BPHYT_RS16610 at 3764.350 kb on + strand, within BPHYT_RS16610 at 3764.350 kb on + strand, within BPHYT_RS16610 at 3764.350 kb on + strand, within BPHYT_RS16610 at 3764.350 kb on + strand, within BPHYT_RS16610 at 3764.350 kb on + strand, within BPHYT_RS16610 at 3764.351 kb on - strand, within BPHYT_RS16610 at 3764.351 kb on - strand, within BPHYT_RS16610 at 3764.351 kb on - strand, within BPHYT_RS16610 at 3764.351 kb on - strand, within BPHYT_RS16610 at 3764.351 kb on - strand, within BPHYT_RS16610 at 3764.351 kb on - strand, within BPHYT_RS16610 at 3764.351 kb on - strand, within BPHYT_RS16610 at 3764.351 kb on - strand, within BPHYT_RS16610 at 3764.559 kb on - strand at 3764.590 kb on + strand at 3764.632 kb on - strand at 3765.357 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 3,763,839 + -0.7 3,763,840 - -0.0 3,763,840 - -0.1 3,763,933 + -0.5 3,763,933 + +0.8 3,763,934 - -0.2 3,764,249 - -1.9 3,764,258 - BPHYT_RS16610 0.61 +1.6 3,764,258 - BPHYT_RS16610 0.61 -0.1 3,764,287 + BPHYT_RS16610 0.66 -0.7 3,764,287 + BPHYT_RS16610 0.66 +0.0 3,764,287 + BPHYT_RS16610 0.66 -0.1 3,764,350 + BPHYT_RS16610 0.76 -0.2 3,764,350 + BPHYT_RS16610 0.76 -0.3 3,764,350 + BPHYT_RS16610 0.76 -0.4 3,764,350 + BPHYT_RS16610 0.76 -0.3 3,764,350 + BPHYT_RS16610 0.76 +0.5 3,764,350 + BPHYT_RS16610 0.76 -0.4 3,764,351 - BPHYT_RS16610 0.76 -0.3 3,764,351 - BPHYT_RS16610 0.76 -0.5 3,764,351 - BPHYT_RS16610 0.76 -0.1 3,764,351 - BPHYT_RS16610 0.76 -0.6 3,764,351 - BPHYT_RS16610 0.76 -0.3 3,764,351 - BPHYT_RS16610 0.76 -0.2 3,764,351 - BPHYT_RS16610 0.76 -0.2 3,764,351 - BPHYT_RS16610 0.76 -0.5 3,764,559 - +1.7 3,764,590 + -0.5 3,764,632 - -0.2 3,765,357 + +0.3
Or see this region's nucleotide sequence