Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16615

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS16605 and BPHYT_RS16610 are separated by 197 nucleotidesBPHYT_RS16610 and BPHYT_RS16615 are separated by 160 nucleotidesBPHYT_RS16615 and BPHYT_RS16620 are separated by 122 nucleotides BPHYT_RS16605: BPHYT_RS16605 - crossover junction endodeoxyribonuclease RuvC, at 3,763,132 to 3,763,674 _RS16605 BPHYT_RS16610: BPHYT_RS16610 - amino acid transporter, at 3,763,872 to 3,764,504 _RS16610 BPHYT_RS16615: BPHYT_RS16615 - holliday junction ATP-dependent DNA helicase RuvA, at 3,764,665 to 3,765,246 _RS16615 BPHYT_RS16620: BPHYT_RS16620 - holliday junction ATP-dependent DNA helicase RuvB, at 3,765,369 to 3,766,433 _RS16620 Position (kb) 3764 3765 3766Strain fitness (log2 ratio) -2 -1 0 1at 3763.839 kb on + strandat 3763.840 kb on - strandat 3763.840 kb on - strandat 3763.933 kb on + strandat 3763.933 kb on + strandat 3763.934 kb on - strandat 3764.249 kb on - strandat 3764.258 kb on - strand, within BPHYT_RS16610at 3764.258 kb on - strand, within BPHYT_RS16610at 3764.287 kb on + strand, within BPHYT_RS16610at 3764.287 kb on + strand, within BPHYT_RS16610at 3764.287 kb on + strand, within BPHYT_RS16610at 3764.350 kb on + strand, within BPHYT_RS16610at 3764.350 kb on + strand, within BPHYT_RS16610at 3764.350 kb on + strand, within BPHYT_RS16610at 3764.350 kb on + strand, within BPHYT_RS16610at 3764.350 kb on + strand, within BPHYT_RS16610at 3764.350 kb on + strand, within BPHYT_RS16610at 3764.351 kb on - strand, within BPHYT_RS16610at 3764.351 kb on - strand, within BPHYT_RS16610at 3764.351 kb on - strand, within BPHYT_RS16610at 3764.351 kb on - strand, within BPHYT_RS16610at 3764.351 kb on - strand, within BPHYT_RS16610at 3764.351 kb on - strand, within BPHYT_RS16610at 3764.351 kb on - strand, within BPHYT_RS16610at 3764.351 kb on - strand, within BPHYT_RS16610at 3764.559 kb on - strandat 3764.590 kb on + strandat 3764.632 kb on - strandat 3765.357 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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3,763,839 + -0.7
3,763,840 - -0.0
3,763,840 - -0.1
3,763,933 + -0.5
3,763,933 + +0.8
3,763,934 - -0.2
3,764,249 - -1.9
3,764,258 - BPHYT_RS16610 0.61 +1.6
3,764,258 - BPHYT_RS16610 0.61 -0.1
3,764,287 + BPHYT_RS16610 0.66 -0.7
3,764,287 + BPHYT_RS16610 0.66 +0.0
3,764,287 + BPHYT_RS16610 0.66 -0.1
3,764,350 + BPHYT_RS16610 0.76 -0.2
3,764,350 + BPHYT_RS16610 0.76 -0.3
3,764,350 + BPHYT_RS16610 0.76 -0.4
3,764,350 + BPHYT_RS16610 0.76 -0.3
3,764,350 + BPHYT_RS16610 0.76 +0.5
3,764,350 + BPHYT_RS16610 0.76 -0.4
3,764,351 - BPHYT_RS16610 0.76 -0.3
3,764,351 - BPHYT_RS16610 0.76 -0.5
3,764,351 - BPHYT_RS16610 0.76 -0.1
3,764,351 - BPHYT_RS16610 0.76 -0.6
3,764,351 - BPHYT_RS16610 0.76 -0.3
3,764,351 - BPHYT_RS16610 0.76 -0.2
3,764,351 - BPHYT_RS16610 0.76 -0.2
3,764,351 - BPHYT_RS16610 0.76 -0.5
3,764,559 - +1.7
3,764,590 + -0.5
3,764,632 - -0.2
3,765,357 + +0.3

Or see this region's nucleotide sequence