Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10515

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10510 and BPHYT_RS10515 are separated by 91 nucleotidesBPHYT_RS10515 and BPHYT_RS10520 are separated by 53 nucleotides BPHYT_RS10510: BPHYT_RS10510 - AraC family transcriptional regulator, at 2,394,143 to 2,395,168 _RS10510 BPHYT_RS10515: BPHYT_RS10515 - DNA glycosylase, at 2,395,260 to 2,395,790 _RS10515 BPHYT_RS10520: BPHYT_RS10520 - LysR family transcriptional regulator, at 2,395,844 to 2,396,803 _RS10520 Position (kb) 2395 2396Strain fitness (log2 ratio) -1 0 1at 2394.899 kb on + strand, within BPHYT_RS10510at 2394.900 kb on - strand, within BPHYT_RS10510at 2395.738 kb on - strandat 2395.846 kb on - strandat 2395.846 kb on - strandat 2396.307 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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2,394,899 + BPHYT_RS10510 0.74 +0.7
2,394,900 - BPHYT_RS10510 0.74 +0.7
2,395,738 - -0.0
2,395,846 - +0.3
2,395,846 - -0.1
2,396,307 + +1.2

Or see this region's nucleotide sequence