Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09265

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS09260 and BPHYT_RS09265 are separated by 79 nucleotidesBPHYT_RS09265 and BPHYT_RS09270 are separated by 81 nucleotides BPHYT_RS09260: BPHYT_RS09260 - histidine kinase, at 2,097,355 to 2,098,974 _RS09260 BPHYT_RS09265: BPHYT_RS09265 - chemotaxis protein CheY, at 2,099,054 to 2,099,563 _RS09265 BPHYT_RS09270: BPHYT_RS09270 - histidine kinase, at 2,099,645 to 2,101,618 _RS09270 Position (kb) 2099 2100Strain fitness (log2 ratio) -2 -1 0 1at 2098.220 kb on - strand, within BPHYT_RS09260at 2098.751 kb on - strand, within BPHYT_RS09260at 2098.751 kb on - strand, within BPHYT_RS09260at 2098.754 kb on - strand, within BPHYT_RS09260at 2098.789 kb on + strand, within BPHYT_RS09260at 2098.789 kb on + strand, within BPHYT_RS09260at 2098.876 kb on - strandat 2099.011 kb on + strandat 2099.082 kb on + strandat 2099.192 kb on + strand, within BPHYT_RS09265at 2099.454 kb on - strand, within BPHYT_RS09265at 2099.474 kb on + strand, within BPHYT_RS09265at 2099.609 kb on - strandat 2099.626 kb on + strandat 2099.678 kb on + strandat 2099.920 kb on + strand, within BPHYT_RS09270at 2099.991 kb on - strand, within BPHYT_RS09270at 2100.000 kb on - strand, within BPHYT_RS09270at 2100.093 kb on - strand, within BPHYT_RS09270at 2100.176 kb on + strand, within BPHYT_RS09270at 2100.182 kb on + strand, within BPHYT_RS09270at 2100.209 kb on + strand, within BPHYT_RS09270

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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2,098,220 - BPHYT_RS09260 0.53 -0.2
2,098,751 - BPHYT_RS09260 0.86 -0.5
2,098,751 - BPHYT_RS09260 0.86 -1.1
2,098,754 - BPHYT_RS09260 0.86 +0.3
2,098,789 + BPHYT_RS09260 0.89 -1.6
2,098,789 + BPHYT_RS09260 0.89 -0.2
2,098,876 - +0.0
2,099,011 + -1.4
2,099,082 + +0.1
2,099,192 + BPHYT_RS09265 0.27 -0.6
2,099,454 - BPHYT_RS09265 0.78 +0.1
2,099,474 + BPHYT_RS09265 0.82 -1.9
2,099,609 - -0.1
2,099,626 + -1.0
2,099,678 + +0.2
2,099,920 + BPHYT_RS09270 0.14 +0.1
2,099,991 - BPHYT_RS09270 0.18 +0.6
2,100,000 - BPHYT_RS09270 0.18 +0.3
2,100,093 - BPHYT_RS09270 0.23 +0.1
2,100,176 + BPHYT_RS09270 0.27 +0.8
2,100,182 + BPHYT_RS09270 0.27 -0.3
2,100,209 + BPHYT_RS09270 0.29 -0.2

Or see this region's nucleotide sequence