Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09055

Experiment: Lomefloxacin 0.001 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS09050 and BPHYT_RS09055 are separated by 781 nucleotidesBPHYT_RS09055 and BPHYT_RS09060 are separated by 67 nucleotidesBPHYT_RS09060 and BPHYT_RS09065 overlap by 17 nucleotidesBPHYT_RS09065 and BPHYT_RS09070 are separated by 23 nucleotides BPHYT_RS09050: BPHYT_RS09050 - thioredoxin, at 2,048,137 to 2,048,463 _RS09050 BPHYT_RS09055: BPHYT_RS09055 - DNA polymerase III subunit gamma/tau, at 2,049,245 to 2,051,926 _RS09055 BPHYT_RS09060: BPHYT_RS09060 - hypothetical protein, at 2,051,994 to 2,052,320 _RS09060 BPHYT_RS09065: BPHYT_RS09065 - hypothetical protein, at 2,052,304 to 2,052,570 _RS09065 BPHYT_RS09070: BPHYT_RS09070 - recombination protein RecR, at 2,052,594 to 2,053,190 _RS09070 Position (kb) 2049 2050 2051 2052Strain fitness (log2 ratio) -1 0 1at 2048.473 kb on - strandat 2048.479 kb on - strandat 2048.587 kb on - strandat 2048.652 kb on - strandat 2048.660 kb on - strandat 2048.696 kb on + strandat 2048.697 kb on - strandat 2048.697 kb on - strandat 2048.753 kb on + strandat 2048.754 kb on - strandat 2048.813 kb on + strandat 2048.813 kb on + strandat 2048.814 kb on - strandat 2048.814 kb on - strandat 2048.814 kb on - strandat 2048.815 kb on + strandat 2048.816 kb on - strandat 2048.816 kb on - strandat 2048.861 kb on + strandat 2048.861 kb on + strandat 2048.861 kb on + strandat 2048.862 kb on - strandat 2048.862 kb on - strandat 2048.862 kb on - strandat 2049.081 kb on + strandat 2049.112 kb on + strandat 2049.112 kb on + strandat 2049.112 kb on + strandat 2049.159 kb on + strandat 2051.884 kb on + strandat 2052.571 kb on + strandat 2052.903 kb on + strand, within BPHYT_RS09070at 2052.903 kb on + strand, within BPHYT_RS09070at 2052.904 kb on - strand, within BPHYT_RS09070

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
remove
2,048,473 - -0.0
2,048,479 - -0.3
2,048,587 - +1.2
2,048,652 - +0.2
2,048,660 - +0.1
2,048,696 + +0.5
2,048,697 - +0.7
2,048,697 - +0.0
2,048,753 + +0.3
2,048,754 - -0.2
2,048,813 + +0.3
2,048,813 + +0.3
2,048,814 - +0.6
2,048,814 - +0.4
2,048,814 - +0.5
2,048,815 + +0.6
2,048,816 - -0.2
2,048,816 - -0.3
2,048,861 + +0.1
2,048,861 + +0.4
2,048,861 + +0.9
2,048,862 - -0.1
2,048,862 - +0.3
2,048,862 - +0.0
2,049,081 + -0.0
2,049,112 + +0.0
2,049,112 + -0.9
2,049,112 + +0.2
2,049,159 + +0.2
2,051,884 + -0.9
2,052,571 + -0.3
2,052,903 + BPHYT_RS09070 0.52 -0.8
2,052,903 + BPHYT_RS09070 0.52 -0.5
2,052,904 - BPHYT_RS09070 0.52 -1.1

Or see this region's nucleotide sequence