Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS09050 and BPHYT_RS09055 are separated by 781 nucleotides BPHYT_RS09055 and BPHYT_RS09060 are separated by 67 nucleotides BPHYT_RS09060 and BPHYT_RS09065 overlap by 17 nucleotides BPHYT_RS09065 and BPHYT_RS09070 are separated by 23 nucleotides
BPHYT_RS09050: BPHYT_RS09050 - thioredoxin, at 2,048,137 to 2,048,463
_RS09050
BPHYT_RS09055: BPHYT_RS09055 - DNA polymerase III subunit gamma/tau, at 2,049,245 to 2,051,926
_RS09055
BPHYT_RS09060: BPHYT_RS09060 - hypothetical protein, at 2,051,994 to 2,052,320
_RS09060
BPHYT_RS09065: BPHYT_RS09065 - hypothetical protein, at 2,052,304 to 2,052,570
_RS09065
BPHYT_RS09070: BPHYT_RS09070 - recombination protein RecR, at 2,052,594 to 2,053,190
_RS09070
Position (kb)
2049
2050
2051
2052 Strain fitness (log2 ratio)
-1
0
1 at 2048.473 kb on - strand at 2048.479 kb on - strand at 2048.587 kb on - strand at 2048.652 kb on - strand at 2048.660 kb on - strand at 2048.696 kb on + strand at 2048.697 kb on - strand at 2048.697 kb on - strand at 2048.753 kb on + strand at 2048.754 kb on - strand at 2048.813 kb on + strand at 2048.813 kb on + strand at 2048.814 kb on - strand at 2048.814 kb on - strand at 2048.814 kb on - strand at 2048.815 kb on + strand at 2048.816 kb on - strand at 2048.816 kb on - strand at 2048.861 kb on + strand at 2048.861 kb on + strand at 2048.861 kb on + strand at 2048.862 kb on - strand at 2048.862 kb on - strand at 2048.862 kb on - strand at 2049.081 kb on + strand at 2049.112 kb on + strand at 2049.112 kb on + strand at 2049.112 kb on + strand at 2049.159 kb on + strand at 2051.884 kb on + strand at 2052.571 kb on + strand at 2052.903 kb on + strand, within BPHYT_RS09070 at 2052.903 kb on + strand, within BPHYT_RS09070 at 2052.904 kb on - strand, within BPHYT_RS09070
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 2,048,473 - -0.0 2,048,479 - -0.3 2,048,587 - +1.2 2,048,652 - +0.2 2,048,660 - +0.1 2,048,696 + +0.5 2,048,697 - +0.7 2,048,697 - +0.0 2,048,753 + +0.3 2,048,754 - -0.2 2,048,813 + +0.3 2,048,813 + +0.3 2,048,814 - +0.6 2,048,814 - +0.4 2,048,814 - +0.5 2,048,815 + +0.6 2,048,816 - -0.2 2,048,816 - -0.3 2,048,861 + +0.1 2,048,861 + +0.4 2,048,861 + +0.9 2,048,862 - -0.1 2,048,862 - +0.3 2,048,862 - +0.0 2,049,081 + -0.0 2,049,112 + +0.0 2,049,112 + -0.9 2,049,112 + +0.2 2,049,159 + +0.2 2,051,884 + -0.9 2,052,571 + -0.3 2,052,903 + BPHYT_RS09070 0.52 -0.8 2,052,903 + BPHYT_RS09070 0.52 -0.5 2,052,904 - BPHYT_RS09070 0.52 -1.1
Or see this region's nucleotide sequence