Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08860

Experiment: Lomefloxacin 0.001 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS08850 and BPHYT_RS08855 are separated by 293 nucleotidesBPHYT_RS08855 and BPHYT_RS08860 are separated by 51 nucleotidesBPHYT_RS08860 and BPHYT_RS08865 are separated by 2 nucleotidesBPHYT_RS08865 and BPHYT_RS08870 are separated by 27 nucleotidesBPHYT_RS08870 and BPHYT_RS08875 are separated by 144 nucleotides BPHYT_RS08850: BPHYT_RS08850 - transcriptional regulator, at 2,005,634 to 2,006,569 _RS08850 BPHYT_RS08855: BPHYT_RS08855 - 30S ribosomal protein S6, at 2,006,863 to 2,007,237 _RS08855 BPHYT_RS08860: BPHYT_RS08860 - primosomal replication protein N, at 2,007,289 to 2,007,588 _RS08860 BPHYT_RS08865: BPHYT_RS08865 - 30S ribosomal protein S18, at 2,007,591 to 2,007,866 _RS08865 BPHYT_RS08870: BPHYT_RS08870 - 50S ribosomal protein L9, at 2,007,894 to 2,008,346 _RS08870 BPHYT_RS08875: BPHYT_RS08875 - DNA helicase, at 2,008,491 to 2,009,876 _RS08875 Position (kb) 2007 2008Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2006.307 kb on - strand, within BPHYT_RS08850at 2006.369 kb on + strand, within BPHYT_RS08850at 2006.370 kb on - strand, within BPHYT_RS08850at 2006.624 kb on + strandat 2006.625 kb on - strandat 2008.367 kb on + strandat 2008.368 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
remove
2,006,307 - BPHYT_RS08850 0.72 -2.4
2,006,369 + BPHYT_RS08850 0.79 -0.6
2,006,370 - BPHYT_RS08850 0.79 -2.1
2,006,624 + +0.6
2,006,625 - +0.7
2,008,367 + +4.0
2,008,368 - -0.5

Or see this region's nucleotide sequence