Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07975 and BPHYT_RS07980 overlap by 4 nucleotides BPHYT_RS07980 and BPHYT_RS07985 are separated by 23 nucleotides BPHYT_RS07985 and BPHYT_RS07990 are separated by 153 nucleotides
BPHYT_RS07975: BPHYT_RS07975 - exodeoxyribonuclease V subunit beta, at 1,817,974 to 1,821,672
_RS07975
BPHYT_RS07980: BPHYT_RS07980 - exodeoxyribonuclease V subunit alpha, at 1,821,669 to 1,823,756
_RS07980
BPHYT_RS07985: BPHYT_RS07985 - membrane protein, at 1,823,780 to 1,824,421
_RS07985
BPHYT_RS07990: BPHYT_RS07990 - peptide chain release factor I, at 1,824,575 to 1,824,979
_RS07990
Position (kb) 1821
1822
1823
1824 Strain fitness (log2 ratio) -2
-1
0
1 at 1822.903 kb on + strand, within BPHYT_RS07980 at 1823.755 kb on - strand at 1824.090 kb on + strand, within BPHYT_RS07985 at 1824.430 kb on - strand at 1824.482 kb on - strand at 1824.543 kb on + strand at 1824.543 kb on + strand at 1824.544 kb on - strand at 1824.544 kb on - strand at 1824.544 kb on - strand at 1824.587 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 1,822,903 + BPHYT_RS07980 0.59 -2.0 1,823,755 - -0.4 1,824,090 + BPHYT_RS07985 0.48 -0.2 1,824,430 - -0.2 1,824,482 - -0.2 1,824,543 + -0.5 1,824,543 + -1.8 1,824,544 - -0.7 1,824,544 - -0.5 1,824,544 - +0.3 1,824,587 + +0.3
Or see this region's nucleotide sequence