Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS05845 and BPHYT_RS05850 are separated by 13 nucleotides BPHYT_RS05850 and BPHYT_RS05855 are separated by 511 nucleotides BPHYT_RS05855 and BPHYT_RS05860 overlap by 76 nucleotides BPHYT_RS05860 and BPHYT_RS05865 are separated by 2 nucleotides
BPHYT_RS05845: BPHYT_RS05845 - hypothetical protein, at 1,329,237 to 1,329,659
_RS05845
BPHYT_RS05850: BPHYT_RS05850 - hypothetical protein, at 1,329,673 to 1,329,930
_RS05850
BPHYT_RS05855: BPHYT_RS05855 - restriction endonuclease subunit M, at 1,330,442 to 1,331,176
_RS05855
BPHYT_RS05860: BPHYT_RS05860 - ATP-binding protein, at 1,331,101 to 1,331,889
_RS05860
BPHYT_RS05865: BPHYT_RS05865 - integrase, at 1,331,892 to 1,333,418
_RS05865
Position (kb) 1330
1331
1332 Strain fitness (log2 ratio) -1
0
1
2 at 1329.558 kb on + strand, within BPHYT_RS05845 at 1329.559 kb on - strand, within BPHYT_RS05845 at 1329.669 kb on - strand at 1329.734 kb on + strand, within BPHYT_RS05850 at 1329.849 kb on - strand, within BPHYT_RS05850 at 1330.031 kb on + strand at 1330.190 kb on - strand at 1330.203 kb on - strand at 1330.227 kb on + strand at 1330.228 kb on - strand at 1330.391 kb on + strand at 1330.391 kb on + strand at 1330.391 kb on + strand at 1330.441 kb on + strand at 1330.761 kb on - strand, within BPHYT_RS05855 at 1330.761 kb on - strand, within BPHYT_RS05855 at 1330.895 kb on - strand, within BPHYT_RS05855 at 1330.952 kb on - strand, within BPHYT_RS05855 at 1330.977 kb on - strand, within BPHYT_RS05855 at 1331.012 kb on + strand, within BPHYT_RS05855 at 1331.012 kb on + strand, within BPHYT_RS05855
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 1,329,558 + BPHYT_RS05845 0.76 +0.0 1,329,559 - BPHYT_RS05845 0.76 -0.7 1,329,669 - -0.4 1,329,734 + BPHYT_RS05850 0.24 -0.4 1,329,849 - BPHYT_RS05850 0.68 +0.1 1,330,031 + -1.0 1,330,190 - -0.0 1,330,203 - +0.4 1,330,227 + +0.1 1,330,228 - +0.5 1,330,391 + -0.8 1,330,391 + -1.0 1,330,391 + +2.1 1,330,441 + +0.2 1,330,761 - BPHYT_RS05855 0.43 +0.1 1,330,761 - BPHYT_RS05855 0.43 -0.9 1,330,895 - BPHYT_RS05855 0.62 +0.5 1,330,952 - BPHYT_RS05855 0.69 +0.4 1,330,977 - BPHYT_RS05855 0.73 +0.2 1,331,012 + BPHYT_RS05855 0.78 +0.7 1,331,012 + BPHYT_RS05855 0.78 -0.2
Or see this region's nucleotide sequence