Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05855

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS05845 and BPHYT_RS05850 are separated by 13 nucleotidesBPHYT_RS05850 and BPHYT_RS05855 are separated by 511 nucleotidesBPHYT_RS05855 and BPHYT_RS05860 overlap by 76 nucleotidesBPHYT_RS05860 and BPHYT_RS05865 are separated by 2 nucleotides BPHYT_RS05845: BPHYT_RS05845 - hypothetical protein, at 1,329,237 to 1,329,659 _RS05845 BPHYT_RS05850: BPHYT_RS05850 - hypothetical protein, at 1,329,673 to 1,329,930 _RS05850 BPHYT_RS05855: BPHYT_RS05855 - restriction endonuclease subunit M, at 1,330,442 to 1,331,176 _RS05855 BPHYT_RS05860: BPHYT_RS05860 - ATP-binding protein, at 1,331,101 to 1,331,889 _RS05860 BPHYT_RS05865: BPHYT_RS05865 - integrase, at 1,331,892 to 1,333,418 _RS05865 Position (kb) 1330 1331 1332Strain fitness (log2 ratio) -1 0 1 2at 1329.558 kb on + strand, within BPHYT_RS05845at 1329.559 kb on - strand, within BPHYT_RS05845at 1329.669 kb on - strandat 1329.734 kb on + strand, within BPHYT_RS05850at 1329.849 kb on - strand, within BPHYT_RS05850at 1330.031 kb on + strandat 1330.190 kb on - strandat 1330.203 kb on - strandat 1330.227 kb on + strandat 1330.228 kb on - strandat 1330.391 kb on + strandat 1330.391 kb on + strandat 1330.391 kb on + strandat 1330.441 kb on + strandat 1330.761 kb on - strand, within BPHYT_RS05855at 1330.761 kb on - strand, within BPHYT_RS05855at 1330.895 kb on - strand, within BPHYT_RS05855at 1330.952 kb on - strand, within BPHYT_RS05855at 1330.977 kb on - strand, within BPHYT_RS05855at 1331.012 kb on + strand, within BPHYT_RS05855at 1331.012 kb on + strand, within BPHYT_RS05855

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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1,329,558 + BPHYT_RS05845 0.76 +0.0
1,329,559 - BPHYT_RS05845 0.76 -0.7
1,329,669 - -0.4
1,329,734 + BPHYT_RS05850 0.24 -0.4
1,329,849 - BPHYT_RS05850 0.68 +0.1
1,330,031 + -1.0
1,330,190 - -0.0
1,330,203 - +0.4
1,330,227 + +0.1
1,330,228 - +0.5
1,330,391 + -0.8
1,330,391 + -1.0
1,330,391 + +2.1
1,330,441 + +0.2
1,330,761 - BPHYT_RS05855 0.43 +0.1
1,330,761 - BPHYT_RS05855 0.43 -0.9
1,330,895 - BPHYT_RS05855 0.62 +0.5
1,330,952 - BPHYT_RS05855 0.69 +0.4
1,330,977 - BPHYT_RS05855 0.73 +0.2
1,331,012 + BPHYT_RS05855 0.78 +0.7
1,331,012 + BPHYT_RS05855 0.78 -0.2

Or see this region's nucleotide sequence