Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04800

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04795 and BPHYT_RS04800 are separated by 58 nucleotidesBPHYT_RS04800 and BPHYT_RS04805 are separated by 97 nucleotidesBPHYT_RS04805 and BPHYT_RS04810 are separated by 56 nucleotides BPHYT_RS04795: BPHYT_RS04795 - cytosol aminopeptidase, at 1,106,226 to 1,107,752 _RS04795 BPHYT_RS04800: BPHYT_RS04800 - DNA polymerase III subunit chi, at 1,107,811 to 1,108,227 _RS04800 BPHYT_RS04805: BPHYT_RS04805 - hypothetical protein, at 1,108,325 to 1,109,029 _RS04805 BPHYT_RS04810: BPHYT_RS04810 - cytochrome C, at 1,109,086 to 1,109,424 _RS04810 Position (kb) 1107 1108 1109Strain fitness (log2 ratio) -2 -1 0 1at 1107.001 kb on - strand, within BPHYT_RS04795at 1107.111 kb on + strand, within BPHYT_RS04795at 1107.111 kb on + strand, within BPHYT_RS04795at 1107.111 kb on + strand, within BPHYT_RS04795at 1107.111 kb on + strand, within BPHYT_RS04795at 1107.287 kb on + strand, within BPHYT_RS04795at 1107.513 kb on + strand, within BPHYT_RS04795at 1107.763 kb on + strandat 1107.763 kb on + strandat 1108.210 kb on + strandat 1108.210 kb on + strandat 1108.211 kb on - strandat 1108.225 kb on + strandat 1108.225 kb on + strandat 1108.225 kb on + strandat 1108.225 kb on + strandat 1109.035 kb on + strandat 1109.087 kb on + strandat 1109.087 kb on + strandat 1109.146 kb on - strand, within BPHYT_RS04810

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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1,107,001 - BPHYT_RS04795 0.51 -2.3
1,107,111 + BPHYT_RS04795 0.58 -0.7
1,107,111 + BPHYT_RS04795 0.58 +0.3
1,107,111 + BPHYT_RS04795 0.58 -0.9
1,107,111 + BPHYT_RS04795 0.58 -0.5
1,107,287 + BPHYT_RS04795 0.69 -1.8
1,107,513 + BPHYT_RS04795 0.84 +0.3
1,107,763 + -1.1
1,107,763 + -0.8
1,108,210 + +0.0
1,108,210 + -1.4
1,108,211 - -1.2
1,108,225 + -0.1
1,108,225 + +0.1
1,108,225 + -1.5
1,108,225 + -0.3
1,109,035 + +0.1
1,109,087 + +0.5
1,109,087 + -1.0
1,109,146 - BPHYT_RS04810 0.18 -0.6

Or see this region's nucleotide sequence