Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04470

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04465 and BPHYT_RS04470 are separated by 301 nucleotidesBPHYT_RS04470 and BPHYT_RS04475 are separated by 213 nucleotides BPHYT_RS04465: BPHYT_RS04465 - polysaccharide biosynthesis protein, at 1,032,364 to 1,033,626 _RS04465 BPHYT_RS04470: BPHYT_RS04470 - phosphoglucomutase, at 1,033,928 to 1,035,322 _RS04470 BPHYT_RS04475: BPHYT_RS04475 - glycosyl transferase family 1, at 1,035,536 to 1,036,537 _RS04475 Position (kb) 1033 1034 1035 1036Strain fitness (log2 ratio) -1 0 1at 1033.785 kb on + strandat 1033.786 kb on - strandat 1033.786 kb on - strandat 1033.797 kb on - strandat 1033.799 kb on - strandat 1033.822 kb on + strandat 1033.824 kb on + strandat 1033.824 kb on + strandat 1035.320 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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1,033,785 + -0.2
1,033,786 - -0.7
1,033,786 - +0.3
1,033,797 - +1.6
1,033,799 - +1.5
1,033,822 + -0.0
1,033,824 + -0.8
1,033,824 + -0.1
1,035,320 + -0.2

Or see this region's nucleotide sequence