Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03825 and BPHYT_RS03830 are separated by 92 nucleotides BPHYT_RS03830 and BPHYT_RS03835 overlap by 4 nucleotides
BPHYT_RS03825: BPHYT_RS03825 - enoyl-CoA hydratase, at 864,289 to 865,113
_RS03825
BPHYT_RS03830: BPHYT_RS03830 - hypothetical protein, at 865,206 to 865,820
_RS03830
BPHYT_RS03835: BPHYT_RS03835 - D-lactate dehydrogenase, at 865,817 to 866,815
_RS03835
Position (kb) 865
866 Strain fitness (log2 ratio) -2
-1
0
1
2 at 864.206 kb on - strand at 864.286 kb on + strand at 864.287 kb on - strand at 864.287 kb on - strand at 864.389 kb on + strand at 865.109 kb on - strand at 865.109 kb on - strand at 865.126 kb on - strand at 865.126 kb on - strand at 865.151 kb on - strand at 865.185 kb on + strand at 865.185 kb on + strand at 865.186 kb on - strand at 865.190 kb on - strand at 865.190 kb on - strand at 865.215 kb on - strand at 865.215 kb on - strand at 865.229 kb on + strand at 865.234 kb on + strand at 865.247 kb on - strand at 865.371 kb on + strand, within BPHYT_RS03830 at 865.483 kb on - strand, within BPHYT_RS03830 at 865.483 kb on - strand, within BPHYT_RS03830 at 865.721 kb on - strand, within BPHYT_RS03830 at 866.034 kb on + strand, within BPHYT_RS03835 at 866.035 kb on - strand, within BPHYT_RS03835 at 866.103 kb on - strand, within BPHYT_RS03835 at 866.178 kb on + strand, within BPHYT_RS03835 at 866.299 kb on - strand, within BPHYT_RS03835 at 866.299 kb on - strand, within BPHYT_RS03835 at 866.437 kb on + strand, within BPHYT_RS03835 at 866.743 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 864,206 - -0.1 864,286 + +0.0 864,287 - -0.2 864,287 - -0.5 864,389 + +2.4 865,109 - -1.2 865,109 - -2.2 865,126 - -0.0 865,126 - +0.2 865,151 - -0.1 865,185 + -0.2 865,185 + -1.2 865,186 - -0.8 865,190 - +0.4 865,190 - -0.5 865,215 - +0.1 865,215 - -0.5 865,229 + -0.5 865,234 + -0.1 865,247 - -1.2 865,371 + BPHYT_RS03830 0.27 +0.8 865,483 - BPHYT_RS03830 0.45 +0.1 865,483 - BPHYT_RS03830 0.45 +0.3 865,721 - BPHYT_RS03830 0.84 +0.1 866,034 + BPHYT_RS03835 0.22 +0.0 866,035 - BPHYT_RS03835 0.22 -0.0 866,103 - BPHYT_RS03835 0.29 -0.2 866,178 + BPHYT_RS03835 0.36 -0.9 866,299 - BPHYT_RS03835 0.48 -0.2 866,299 - BPHYT_RS03835 0.48 -1.0 866,437 + BPHYT_RS03835 0.62 -0.7 866,743 - +0.0
Or see this region's nucleotide sequence