Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00945 and BPHYT_RS00950 are separated by 417 nucleotides BPHYT_RS00950 and BPHYT_RS00955 are separated by 12 nucleotides
BPHYT_RS00945: BPHYT_RS00945 - hypothetical protein, at 215,928 to 216,449
_RS00945
BPHYT_RS00950: BPHYT_RS00950 - DNA polymerase, at 216,867 to 220,016
_RS00950
BPHYT_RS00955: BPHYT_RS00955 - DNA polymerase, at 220,029 to 221,378
_RS00955
Position (kb) 216
217
218
219
220
221 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 215.941 kb on - strand at 216.160 kb on - strand, within BPHYT_RS00945 at 216.160 kb on - strand, within BPHYT_RS00945 at 216.163 kb on - strand, within BPHYT_RS00945 at 216.163 kb on - strand, within BPHYT_RS00945 at 216.193 kb on - strand, within BPHYT_RS00945 at 216.193 kb on - strand, within BPHYT_RS00945 at 216.428 kb on + strand at 216.429 kb on - strand at 216.465 kb on + strand at 216.466 kb on - strand at 216.492 kb on + strand at 216.492 kb on + strand at 216.620 kb on + strand at 216.620 kb on + strand at 216.620 kb on + strand at 216.620 kb on + strand at 216.621 kb on - strand at 216.695 kb on + strand at 216.711 kb on - strand at 216.836 kb on + strand at 216.853 kb on + strand at 216.895 kb on - strand at 217.160 kb on - strand at 217.197 kb on + strand, within BPHYT_RS00950 at 217.258 kb on + strand, within BPHYT_RS00950 at 217.564 kb on - strand, within BPHYT_RS00950 at 217.765 kb on + strand, within BPHYT_RS00950 at 217.765 kb on + strand, within BPHYT_RS00950 at 217.765 kb on + strand, within BPHYT_RS00950 at 217.765 kb on + strand, within BPHYT_RS00950 at 217.766 kb on - strand, within BPHYT_RS00950 at 217.923 kb on - strand, within BPHYT_RS00950 at 218.071 kb on + strand, within BPHYT_RS00950 at 218.107 kb on + strand, within BPHYT_RS00950 at 218.108 kb on - strand, within BPHYT_RS00950 at 218.173 kb on + strand, within BPHYT_RS00950 at 218.174 kb on - strand, within BPHYT_RS00950 at 218.174 kb on - strand, within BPHYT_RS00950 at 218.270 kb on - strand, within BPHYT_RS00950 at 218.292 kb on + strand, within BPHYT_RS00950 at 218.292 kb on + strand, within BPHYT_RS00950 at 218.293 kb on - strand, within BPHYT_RS00950 at 218.783 kb on - strand, within BPHYT_RS00950 at 218.788 kb on + strand, within BPHYT_RS00950 at 218.788 kb on + strand, within BPHYT_RS00950 at 218.789 kb on - strand, within BPHYT_RS00950 at 218.789 kb on - strand, within BPHYT_RS00950 at 218.789 kb on - strand, within BPHYT_RS00950 at 218.789 kb on - strand, within BPHYT_RS00950 at 218.789 kb on - strand, within BPHYT_RS00950 at 218.865 kb on - strand, within BPHYT_RS00950 at 218.937 kb on - strand, within BPHYT_RS00950 at 219.001 kb on + strand, within BPHYT_RS00950 at 219.016 kb on + strand, within BPHYT_RS00950 at 219.017 kb on - strand, within BPHYT_RS00950 at 219.025 kb on + strand, within BPHYT_RS00950 at 219.026 kb on - strand, within BPHYT_RS00950 at 219.048 kb on + strand, within BPHYT_RS00950 at 219.049 kb on - strand, within BPHYT_RS00950 at 219.118 kb on + strand, within BPHYT_RS00950 at 219.118 kb on + strand, within BPHYT_RS00950 at 219.118 kb on + strand, within BPHYT_RS00950 at 219.118 kb on + strand, within BPHYT_RS00950 at 219.118 kb on + strand, within BPHYT_RS00950 at 219.119 kb on - strand, within BPHYT_RS00950 at 219.137 kb on - strand, within BPHYT_RS00950 at 219.149 kb on + strand, within BPHYT_RS00950 at 219.150 kb on - strand, within BPHYT_RS00950 at 219.209 kb on + strand, within BPHYT_RS00950 at 219.238 kb on + strand, within BPHYT_RS00950 at 219.339 kb on - strand, within BPHYT_RS00950 at 219.339 kb on - strand, within BPHYT_RS00950 at 219.378 kb on - strand, within BPHYT_RS00950 at 219.796 kb on + strand at 220.132 kb on + strand at 220.132 kb on + strand at 220.133 kb on - strand at 220.133 kb on - strand at 220.135 kb on + strand at 220.135 kb on + strand at 220.608 kb on + strand, within BPHYT_RS00955 at 220.719 kb on + strand, within BPHYT_RS00955 at 220.719 kb on + strand, within BPHYT_RS00955 at 220.819 kb on + strand, within BPHYT_RS00955 at 220.819 kb on + strand, within BPHYT_RS00955 at 220.819 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 215,941 - -0.2 216,160 - BPHYT_RS00945 0.44 -0.3 216,160 - BPHYT_RS00945 0.44 -0.3 216,163 - BPHYT_RS00945 0.45 -0.1 216,163 - BPHYT_RS00945 0.45 -0.3 216,193 - BPHYT_RS00945 0.51 -0.1 216,193 - BPHYT_RS00945 0.51 +0.5 216,428 + +1.6 216,429 - +0.9 216,465 + -0.2 216,466 - -0.1 216,492 + +0.5 216,492 + +0.1 216,620 + -0.1 216,620 + -0.3 216,620 + -0.4 216,620 + -0.5 216,621 - -0.0 216,695 + +0.6 216,711 - +0.3 216,836 + +0.0 216,853 + +0.1 216,895 - -1.3 217,160 - -0.6 217,197 + BPHYT_RS00950 0.10 +0.0 217,258 + BPHYT_RS00950 0.12 -0.6 217,564 - BPHYT_RS00950 0.22 -0.0 217,765 + BPHYT_RS00950 0.29 +0.2 217,765 + BPHYT_RS00950 0.29 -0.8 217,765 + BPHYT_RS00950 0.29 -0.0 217,765 + BPHYT_RS00950 0.29 +0.3 217,766 - BPHYT_RS00950 0.29 -0.6 217,923 - BPHYT_RS00950 0.34 -0.4 218,071 + BPHYT_RS00950 0.38 -1.0 218,107 + BPHYT_RS00950 0.39 -0.1 218,108 - BPHYT_RS00950 0.39 -0.1 218,173 + BPHYT_RS00950 0.41 -0.8 218,174 - BPHYT_RS00950 0.41 -0.4 218,174 - BPHYT_RS00950 0.41 +0.2 218,270 - BPHYT_RS00950 0.45 -3.2 218,292 + BPHYT_RS00950 0.45 -0.4 218,292 + BPHYT_RS00950 0.45 +0.4 218,293 - BPHYT_RS00950 0.45 +0.2 218,783 - BPHYT_RS00950 0.61 -0.3 218,788 + BPHYT_RS00950 0.61 -0.5 218,788 + BPHYT_RS00950 0.61 +0.4 218,789 - BPHYT_RS00950 0.61 -0.2 218,789 - BPHYT_RS00950 0.61 +0.1 218,789 - BPHYT_RS00950 0.61 +0.1 218,789 - BPHYT_RS00950 0.61 +0.1 218,789 - BPHYT_RS00950 0.61 -2.1 218,865 - BPHYT_RS00950 0.63 +0.8 218,937 - BPHYT_RS00950 0.66 -0.3 219,001 + BPHYT_RS00950 0.68 -0.6 219,016 + BPHYT_RS00950 0.68 +0.2 219,017 - BPHYT_RS00950 0.68 -0.6 219,025 + BPHYT_RS00950 0.69 -0.6 219,026 - BPHYT_RS00950 0.69 -0.3 219,048 + BPHYT_RS00950 0.69 +0.2 219,049 - BPHYT_RS00950 0.69 -0.2 219,118 + BPHYT_RS00950 0.71 +0.7 219,118 + BPHYT_RS00950 0.71 +0.9 219,118 + BPHYT_RS00950 0.71 -0.9 219,118 + BPHYT_RS00950 0.71 -0.3 219,118 + BPHYT_RS00950 0.71 +2.0 219,119 - BPHYT_RS00950 0.71 -0.9 219,137 - BPHYT_RS00950 0.72 -0.4 219,149 + BPHYT_RS00950 0.72 -0.1 219,150 - BPHYT_RS00950 0.72 -0.1 219,209 + BPHYT_RS00950 0.74 -0.5 219,238 + BPHYT_RS00950 0.75 -0.5 219,339 - BPHYT_RS00950 0.78 +0.3 219,339 - BPHYT_RS00950 0.78 -0.9 219,378 - BPHYT_RS00950 0.80 -1.1 219,796 + -0.1 220,132 + +0.3 220,132 + -1.8 220,133 - -1.1 220,133 - +0.4 220,135 + +0.3 220,135 + +0.6 220,608 + BPHYT_RS00955 0.43 -0.7 220,719 + BPHYT_RS00955 0.51 -0.1 220,719 + BPHYT_RS00955 0.51 +1.8 220,819 + BPHYT_RS00955 0.59 +1.3 220,819 + BPHYT_RS00955 0.59 +1.3 220,819 + +0.7
Or see this region's nucleotide sequence