Experiment: CDM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13730 and BBR_RS13735 are separated by 167 nucleotides BBR_RS13735 and BBR_RS13740 are separated by 91 nucleotides BBR_RS13740 and BBR_RS13745 are separated by 107 nucleotides BBR_RS13745 and BBR_RS13750 are separated by 143 nucleotides
BBR_RS13730: BBR_RS13730 - hypothetical protein, at 853,537 to 855,267
_RS13730
BBR_RS13735: BBR_RS13735 - Lon protease, at 855,435 to 856,358
_RS13735
BBR_RS13740: BBR_RS13740 - DUF3052 domain-containing protein, at 856,450 to 856,866
_RS13740
BBR_RS13745: BBR_RS13745 - tRNA-Val, at 856,974 to 857,047
_RS13745
BBR_RS13750: BBR_RS13750 - DivIVA domain-containing protein, at 857,191 to 858,789
_RS13750
Position (kb) 855
856
857 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 854.447 kb on + strand, within BBR_RS13730 at 854.447 kb on + strand, within BBR_RS13730 at 854.470 kb on - strand, within BBR_RS13730 at 854.532 kb on - strand, within BBR_RS13730 at 854.532 kb on - strand, within BBR_RS13730 at 854.532 kb on - strand, within BBR_RS13730 at 854.564 kb on + strand, within BBR_RS13730 at 854.569 kb on + strand, within BBR_RS13730 at 854.572 kb on - strand, within BBR_RS13730 at 854.572 kb on - strand, within BBR_RS13730 at 854.589 kb on + strand, within BBR_RS13730 at 854.615 kb on + strand, within BBR_RS13730 at 854.847 kb on - strand, within BBR_RS13730 at 854.914 kb on + strand, within BBR_RS13730 at 854.956 kb on + strand, within BBR_RS13730 at 854.959 kb on - strand, within BBR_RS13730 at 854.965 kb on + strand, within BBR_RS13730 at 854.984 kb on - strand, within BBR_RS13730 at 854.995 kb on + strand, within BBR_RS13730 at 854.995 kb on + strand, within BBR_RS13730 at 855.042 kb on - strand, within BBR_RS13730 at 855.043 kb on + strand, within BBR_RS13730 at 855.045 kb on + strand, within BBR_RS13730 at 855.051 kb on - strand, within BBR_RS13730 at 855.051 kb on - strand, within BBR_RS13730 at 855.051 kb on - strand, within BBR_RS13730 at 855.068 kb on + strand, within BBR_RS13730 at 855.079 kb on - strand, within BBR_RS13730 at 855.109 kb on - strand at 855.125 kb on + strand at 855.147 kb on - strand at 855.148 kb on - strand at 855.152 kb on - strand at 855.181 kb on - strand at 855.267 kb on - strand at 855.270 kb on + strand at 855.298 kb on - strand at 855.302 kb on + strand at 855.373 kb on + strand at 855.381 kb on - strand at 855.381 kb on - strand at 855.381 kb on - strand at 855.392 kb on - strand at 855.529 kb on + strand, within BBR_RS13735 at 856.326 kb on - strand at 856.462 kb on + strand at 856.506 kb on - strand, within BBR_RS13740 at 856.507 kb on + strand, within BBR_RS13740 at 856.518 kb on + strand, within BBR_RS13740 at 856.566 kb on + strand, within BBR_RS13740 at 856.594 kb on + strand, within BBR_RS13740 at 856.594 kb on + strand, within BBR_RS13740 at 856.659 kb on + strand, within BBR_RS13740 at 856.659 kb on + strand, within BBR_RS13740 at 856.687 kb on - strand, within BBR_RS13740 at 856.774 kb on + strand, within BBR_RS13740 at 856.811 kb on + strand, within BBR_RS13740 at 856.904 kb on + strand at 856.933 kb on + strand at 856.951 kb on - strand at 857.012 kb on - strand, within BBR_RS13745 at 857.017 kb on + strand, within BBR_RS13745 at 857.061 kb on + strand at 857.080 kb on + strand at 857.128 kb on + strand at 857.148 kb on + strand at 857.148 kb on + strand at 857.156 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CDM1 remove 854,447 + BBR_RS13730 0.53 -0.6 854,447 + BBR_RS13730 0.53 +1.5 854,470 - BBR_RS13730 0.54 -0.1 854,532 - BBR_RS13730 0.57 -0.7 854,532 - BBR_RS13730 0.57 +0.2 854,532 - BBR_RS13730 0.57 +0.6 854,564 + BBR_RS13730 0.59 -4.4 854,569 + BBR_RS13730 0.60 +0.2 854,572 - BBR_RS13730 0.60 -0.1 854,572 - BBR_RS13730 0.60 +0.8 854,589 + BBR_RS13730 0.61 -1.4 854,615 + BBR_RS13730 0.62 -1.7 854,847 - BBR_RS13730 0.76 -1.3 854,914 + BBR_RS13730 0.80 -1.1 854,956 + BBR_RS13730 0.82 -1.3 854,959 - BBR_RS13730 0.82 +0.8 854,965 + BBR_RS13730 0.82 -2.1 854,984 - BBR_RS13730 0.84 -0.4 854,995 + BBR_RS13730 0.84 -1.4 854,995 + BBR_RS13730 0.84 -0.7 855,042 - BBR_RS13730 0.87 -0.3 855,043 + BBR_RS13730 0.87 +0.7 855,045 + BBR_RS13730 0.87 -1.0 855,051 - BBR_RS13730 0.87 -0.7 855,051 - BBR_RS13730 0.87 -2.7 855,051 - BBR_RS13730 0.87 +0.5 855,068 + BBR_RS13730 0.88 -1.6 855,079 - BBR_RS13730 0.89 -0.2 855,109 - -1.8 855,125 + -2.6 855,147 - +0.6 855,148 - -1.5 855,152 - -1.7 855,181 - -1.2 855,267 - -0.8 855,270 + -0.5 855,298 - -0.7 855,302 + -2.7 855,373 + +1.0 855,381 - -1.0 855,381 - -0.7 855,381 - +0.5 855,392 - -3.1 855,529 + BBR_RS13735 0.10 -4.1 856,326 - -2.9 856,462 + -2.4 856,506 - BBR_RS13740 0.13 -2.2 856,507 + BBR_RS13740 0.14 -4.4 856,518 + BBR_RS13740 0.16 -2.5 856,566 + BBR_RS13740 0.28 -4.0 856,594 + BBR_RS13740 0.35 -3.9 856,594 + BBR_RS13740 0.35 -2.7 856,659 + BBR_RS13740 0.50 -1.2 856,659 + BBR_RS13740 0.50 -1.9 856,687 - BBR_RS13740 0.57 -2.3 856,774 + BBR_RS13740 0.78 -2.6 856,811 + BBR_RS13740 0.87 -2.2 856,904 + -2.3 856,933 + -4.0 856,951 - -2.2 857,012 - BBR_RS13745 0.51 +0.9 857,017 + BBR_RS13745 0.58 -0.8 857,061 + -1.3 857,080 + +0.6 857,128 + +0.9 857,148 + -2.2 857,148 + +0.6 857,156 - -3.7
Or see this region's nucleotide sequence