Experiment: CDM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13600 and BBR_RS13605 are separated by 88 nucleotides BBR_RS13605 and BBR_RS13610 are separated by 217 nucleotides
BBR_RS13600: BBR_RS13600 - carbohydrate-binding protein, at 822,879 to 824,192
_RS13600
BBR_RS13605: BBR_RS13605 - GGDEF domain-containing protein, at 824,281 to 826,734
_RS13605
BBR_RS13610: BBR_RS13610 - iron export ABC transporter permease subunit FetB, at 826,952 to 827,740
_RS13610
Position (kb) 824
825
826
827 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 823.356 kb on - strand, within BBR_RS13600 at 823.412 kb on - strand, within BBR_RS13600 at 823.560 kb on + strand, within BBR_RS13600 at 823.568 kb on - strand, within BBR_RS13600 at 823.645 kb on - strand, within BBR_RS13600 at 823.668 kb on - strand, within BBR_RS13600 at 823.678 kb on - strand, within BBR_RS13600 at 823.685 kb on - strand, within BBR_RS13600 at 823.713 kb on + strand, within BBR_RS13600 at 823.730 kb on + strand, within BBR_RS13600 at 823.735 kb on + strand, within BBR_RS13600 at 823.827 kb on + strand, within BBR_RS13600 at 823.913 kb on + strand, within BBR_RS13600 at 823.960 kb on + strand, within BBR_RS13600 at 824.030 kb on + strand, within BBR_RS13600 at 824.033 kb on + strand, within BBR_RS13600 at 824.036 kb on + strand, within BBR_RS13600 at 824.036 kb on + strand, within BBR_RS13600 at 824.060 kb on + strand, within BBR_RS13600 at 824.060 kb on + strand, within BBR_RS13600 at 824.068 kb on - strand at 824.151 kb on + strand at 824.169 kb on - strand at 824.184 kb on + strand at 824.192 kb on - strand at 824.250 kb on - strand at 824.385 kb on + strand at 824.396 kb on + strand at 824.474 kb on + strand at 824.539 kb on - strand, within BBR_RS13605 at 824.672 kb on + strand, within BBR_RS13605 at 824.728 kb on - strand, within BBR_RS13605 at 824.731 kb on + strand, within BBR_RS13605 at 824.819 kb on - strand, within BBR_RS13605 at 824.937 kb on + strand, within BBR_RS13605 at 825.090 kb on + strand, within BBR_RS13605 at 825.098 kb on - strand, within BBR_RS13605 at 825.138 kb on - strand, within BBR_RS13605 at 825.166 kb on + strand, within BBR_RS13605 at 825.166 kb on + strand, within BBR_RS13605 at 825.188 kb on + strand, within BBR_RS13605 at 825.241 kb on + strand, within BBR_RS13605 at 825.335 kb on - strand, within BBR_RS13605 at 825.370 kb on - strand, within BBR_RS13605 at 825.449 kb on - strand, within BBR_RS13605 at 825.451 kb on + strand, within BBR_RS13605 at 825.451 kb on + strand, within BBR_RS13605 at 825.459 kb on - strand, within BBR_RS13605 at 825.459 kb on - strand, within BBR_RS13605 at 825.594 kb on - strand, within BBR_RS13605 at 825.622 kb on + strand, within BBR_RS13605 at 825.632 kb on + strand, within BBR_RS13605 at 825.640 kb on - strand, within BBR_RS13605 at 825.642 kb on - strand, within BBR_RS13605 at 825.680 kb on - strand, within BBR_RS13605 at 825.680 kb on - strand, within BBR_RS13605 at 825.690 kb on - strand, within BBR_RS13605 at 825.709 kb on + strand, within BBR_RS13605 at 825.747 kb on + strand, within BBR_RS13605 at 825.748 kb on + strand, within BBR_RS13605 at 825.752 kb on + strand, within BBR_RS13605 at 825.753 kb on - strand, within BBR_RS13605 at 825.753 kb on - strand, within BBR_RS13605 at 825.789 kb on - strand, within BBR_RS13605 at 825.869 kb on + strand, within BBR_RS13605 at 825.952 kb on - strand, within BBR_RS13605 at 825.952 kb on - strand, within BBR_RS13605 at 825.967 kb on + strand, within BBR_RS13605 at 826.038 kb on + strand, within BBR_RS13605 at 826.038 kb on + strand, within BBR_RS13605 at 826.038 kb on + strand, within BBR_RS13605 at 826.038 kb on + strand, within BBR_RS13605 at 826.040 kb on + strand, within BBR_RS13605 at 826.061 kb on + strand, within BBR_RS13605 at 826.076 kb on + strand, within BBR_RS13605 at 826.132 kb on - strand, within BBR_RS13605 at 826.147 kb on + strand, within BBR_RS13605 at 826.154 kb on - strand, within BBR_RS13605 at 826.154 kb on - strand, within BBR_RS13605 at 826.203 kb on - strand, within BBR_RS13605 at 826.231 kb on + strand, within BBR_RS13605 at 826.274 kb on + strand, within BBR_RS13605 at 826.277 kb on - strand, within BBR_RS13605 at 826.282 kb on - strand, within BBR_RS13605 at 826.295 kb on + strand, within BBR_RS13605 at 826.305 kb on + strand, within BBR_RS13605 at 826.322 kb on + strand, within BBR_RS13605 at 826.385 kb on - strand, within BBR_RS13605 at 826.398 kb on + strand, within BBR_RS13605 at 826.398 kb on + strand, within BBR_RS13605 at 826.507 kb on + strand at 826.544 kb on + strand at 826.561 kb on - strand at 826.574 kb on - strand at 826.593 kb on + strand at 826.607 kb on - strand at 826.610 kb on - strand at 826.624 kb on + strand at 826.639 kb on + strand at 826.652 kb on - strand at 826.689 kb on + strand at 826.712 kb on - strand at 826.719 kb on + strand at 826.734 kb on - strand at 826.832 kb on - strand at 826.939 kb on + strand at 827.007 kb on + strand at 827.013 kb on + strand at 827.013 kb on + strand at 827.021 kb on - strand at 827.039 kb on + strand, within BBR_RS13610 at 827.039 kb on + strand, within BBR_RS13610 at 827.114 kb on - strand, within BBR_RS13610 at 827.121 kb on + strand, within BBR_RS13610 at 827.139 kb on + strand, within BBR_RS13610 at 827.209 kb on - strand, within BBR_RS13610 at 827.213 kb on - strand, within BBR_RS13610 at 827.230 kb on + strand, within BBR_RS13610 at 827.302 kb on + strand, within BBR_RS13610 at 827.310 kb on - strand, within BBR_RS13610 at 827.325 kb on + strand, within BBR_RS13610 at 827.343 kb on - strand, within BBR_RS13610 at 827.346 kb on + strand, within BBR_RS13610 at 827.354 kb on - strand, within BBR_RS13610 at 827.373 kb on + strand, within BBR_RS13610 at 827.373 kb on + strand, within BBR_RS13610 at 827.415 kb on + strand, within BBR_RS13610 at 827.423 kb on - strand, within BBR_RS13610 at 827.430 kb on + strand, within BBR_RS13610 at 827.458 kb on - strand, within BBR_RS13610 at 827.466 kb on + strand, within BBR_RS13610 at 827.473 kb on - strand, within BBR_RS13610 at 827.474 kb on - strand, within BBR_RS13610 at 827.474 kb on - strand, within BBR_RS13610 at 827.545 kb on + strand, within BBR_RS13610 at 827.553 kb on - strand, within BBR_RS13610 at 827.553 kb on - strand, within BBR_RS13610 at 827.592 kb on + strand, within BBR_RS13610 at 827.592 kb on + strand, within BBR_RS13610 at 827.627 kb on + strand, within BBR_RS13610 at 827.627 kb on + strand, within BBR_RS13610 at 827.627 kb on + strand, within BBR_RS13610 at 827.627 kb on + strand, within BBR_RS13610 at 827.635 kb on - strand, within BBR_RS13610 at 827.635 kb on - strand, within BBR_RS13610 at 827.639 kb on + strand, within BBR_RS13610 at 827.717 kb on - strand at 827.733 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CDM1 remove 823,356 - BBR_RS13600 0.36 -0.2 823,412 - BBR_RS13600 0.41 +0.3 823,560 + BBR_RS13600 0.52 -1.2 823,568 - BBR_RS13600 0.52 -0.0 823,645 - BBR_RS13600 0.58 -2.2 823,668 - BBR_RS13600 0.60 -2.5 823,678 - BBR_RS13600 0.61 -2.5 823,685 - BBR_RS13600 0.61 -1.9 823,713 + BBR_RS13600 0.63 -0.8 823,730 + BBR_RS13600 0.65 -0.9 823,735 + BBR_RS13600 0.65 +0.3 823,827 + BBR_RS13600 0.72 -0.9 823,913 + BBR_RS13600 0.79 -1.1 823,960 + BBR_RS13600 0.82 -0.4 824,030 + BBR_RS13600 0.88 +0.5 824,033 + BBR_RS13600 0.88 -1.3 824,036 + BBR_RS13600 0.88 -0.9 824,036 + BBR_RS13600 0.88 -1.9 824,060 + BBR_RS13600 0.90 -0.1 824,060 + BBR_RS13600 0.90 -0.1 824,068 - -1.0 824,151 + -1.0 824,169 - -3.5 824,184 + -1.0 824,192 - -2.8 824,250 - -0.3 824,385 + -0.5 824,396 + -1.5 824,474 + -2.9 824,539 - BBR_RS13605 0.11 -1.6 824,672 + BBR_RS13605 0.16 -1.9 824,728 - BBR_RS13605 0.18 -1.6 824,731 + BBR_RS13605 0.18 -1.5 824,819 - BBR_RS13605 0.22 -2.0 824,937 + BBR_RS13605 0.27 +0.4 825,090 + BBR_RS13605 0.33 -0.2 825,098 - BBR_RS13605 0.33 -2.2 825,138 - BBR_RS13605 0.35 -1.9 825,166 + BBR_RS13605 0.36 +0.3 825,166 + BBR_RS13605 0.36 -1.1 825,188 + BBR_RS13605 0.37 -1.5 825,241 + BBR_RS13605 0.39 -1.1 825,335 - BBR_RS13605 0.43 -1.7 825,370 - BBR_RS13605 0.44 -2.0 825,449 - BBR_RS13605 0.48 -3.5 825,451 + BBR_RS13605 0.48 +0.5 825,451 + BBR_RS13605 0.48 +0.2 825,459 - BBR_RS13605 0.48 -1.8 825,459 - BBR_RS13605 0.48 -0.3 825,594 - BBR_RS13605 0.54 -1.3 825,622 + BBR_RS13605 0.55 -0.7 825,632 + BBR_RS13605 0.55 -1.3 825,640 - BBR_RS13605 0.55 -2.7 825,642 - BBR_RS13605 0.55 -2.0 825,680 - BBR_RS13605 0.57 -0.4 825,680 - BBR_RS13605 0.57 -1.3 825,690 - BBR_RS13605 0.57 -0.8 825,709 + BBR_RS13605 0.58 +2.0 825,747 + BBR_RS13605 0.60 -0.8 825,748 + BBR_RS13605 0.60 -1.1 825,752 + BBR_RS13605 0.60 -0.5 825,753 - BBR_RS13605 0.60 +0.2 825,753 - BBR_RS13605 0.60 -1.2 825,789 - BBR_RS13605 0.61 -1.6 825,869 + BBR_RS13605 0.65 -1.3 825,952 - BBR_RS13605 0.68 -1.1 825,952 - BBR_RS13605 0.68 -1.8 825,967 + BBR_RS13605 0.69 -1.7 826,038 + BBR_RS13605 0.72 -0.6 826,038 + BBR_RS13605 0.72 +0.7 826,038 + BBR_RS13605 0.72 -0.7 826,038 + BBR_RS13605 0.72 +0.7 826,040 + BBR_RS13605 0.72 -1.7 826,061 + BBR_RS13605 0.73 -0.1 826,076 + BBR_RS13605 0.73 -0.7 826,132 - BBR_RS13605 0.75 -0.6 826,147 + BBR_RS13605 0.76 -1.9 826,154 - BBR_RS13605 0.76 -2.2 826,154 - BBR_RS13605 0.76 -1.1 826,203 - BBR_RS13605 0.78 -1.3 826,231 + BBR_RS13605 0.79 -0.3 826,274 + BBR_RS13605 0.81 +0.9 826,277 - BBR_RS13605 0.81 -0.1 826,282 - BBR_RS13605 0.82 -1.0 826,295 + BBR_RS13605 0.82 +0.1 826,305 + BBR_RS13605 0.82 +0.9 826,322 + BBR_RS13605 0.83 -1.8 826,385 - BBR_RS13605 0.86 -2.0 826,398 + BBR_RS13605 0.86 +0.2 826,398 + BBR_RS13605 0.86 -0.0 826,507 + -0.9 826,544 + -0.8 826,561 - -1.9 826,574 - -1.2 826,593 + -0.9 826,607 - -0.8 826,610 - -0.4 826,624 + -0.3 826,639 + -0.9 826,652 - -1.6 826,689 + +1.0 826,712 - +0.9 826,719 + -0.5 826,734 - -0.6 826,832 - -1.9 826,939 + -0.7 827,007 + -1.6 827,013 + +0.2 827,013 + +0.1 827,021 - -2.1 827,039 + BBR_RS13610 0.11 -2.8 827,039 + BBR_RS13610 0.11 -1.4 827,114 - BBR_RS13610 0.21 -0.5 827,121 + BBR_RS13610 0.21 +0.4 827,139 + BBR_RS13610 0.24 -0.7 827,209 - BBR_RS13610 0.33 -1.4 827,213 - BBR_RS13610 0.33 +0.4 827,230 + BBR_RS13610 0.35 -1.4 827,302 + BBR_RS13610 0.44 -0.6 827,310 - BBR_RS13610 0.45 +1.4 827,325 + BBR_RS13610 0.47 +2.1 827,343 - BBR_RS13610 0.50 +0.0 827,346 + BBR_RS13610 0.50 -1.6 827,354 - BBR_RS13610 0.51 +0.2 827,373 + BBR_RS13610 0.53 +1.1 827,373 + BBR_RS13610 0.53 -1.4 827,415 + BBR_RS13610 0.59 -0.0 827,423 - BBR_RS13610 0.60 +0.8 827,430 + BBR_RS13610 0.61 -0.6 827,458 - BBR_RS13610 0.64 -0.4 827,466 + BBR_RS13610 0.65 -0.8 827,473 - BBR_RS13610 0.66 -0.2 827,474 - BBR_RS13610 0.66 -0.2 827,474 - BBR_RS13610 0.66 -0.0 827,545 + BBR_RS13610 0.75 -0.6 827,553 - BBR_RS13610 0.76 -1.1 827,553 - BBR_RS13610 0.76 +0.9 827,592 + BBR_RS13610 0.81 +1.3 827,592 + BBR_RS13610 0.81 +0.9 827,627 + BBR_RS13610 0.86 -0.4 827,627 + BBR_RS13610 0.86 -2.4 827,627 + BBR_RS13610 0.86 +1.4 827,627 + BBR_RS13610 0.86 -0.3 827,635 - BBR_RS13610 0.87 -0.9 827,635 - BBR_RS13610 0.87 -1.3 827,639 + BBR_RS13610 0.87 +0.3 827,717 - -0.8 827,733 + +0.3
Or see this region's nucleotide sequence