Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29795

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29785 and AO356_29790 are separated by 2 nucleotidesAO356_29790 and AO356_29795 are separated by 29 nucleotidesAO356_29795 and AO356_29800 are separated by 231 nucleotides AO356_29785: AO356_29785 - ABC transporter permease, at 6,926,560 to 6,927,273 _29785 AO356_29790: AO356_29790 - ABC transporter permease, at 6,927,276 to 6,927,968 _29790 AO356_29795: AO356_29795 - amino acid transporter, at 6,927,998 to 6,928,804 _29795 AO356_29800: AO356_29800 - AraC family transcriptional regulator, at 6,929,036 to 6,929,836 _29800 Position (kb) 6927 6928 6929Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6927.122 kb on + strand, within AO356_29785at 6927.139 kb on - strand, within AO356_29785at 6927.176 kb on - strand, within AO356_29785at 6927.313 kb on + strandat 6927.326 kb on - strandat 6927.451 kb on + strand, within AO356_29790at 6927.472 kb on + strand, within AO356_29790at 6927.473 kb on - strand, within AO356_29790at 6927.493 kb on - strand, within AO356_29790at 6927.495 kb on + strand, within AO356_29790at 6927.502 kb on + strand, within AO356_29790at 6927.502 kb on + strand, within AO356_29790at 6927.559 kb on - strand, within AO356_29790at 6927.600 kb on + strand, within AO356_29790at 6927.601 kb on - strand, within AO356_29790at 6927.602 kb on + strand, within AO356_29790at 6927.602 kb on + strand, within AO356_29790at 6927.822 kb on + strand, within AO356_29790at 6927.823 kb on - strand, within AO356_29790at 6927.823 kb on - strand, within AO356_29790at 6927.883 kb on - strand, within AO356_29790at 6927.942 kb on - strandat 6927.996 kb on + strandat 6927.996 kb on + strandat 6927.997 kb on - strandat 6928.060 kb on + strandat 6928.178 kb on - strand, within AO356_29795at 6928.262 kb on - strand, within AO356_29795at 6928.339 kb on + strand, within AO356_29795at 6928.807 kb on - strandat 6928.810 kb on + strandat 6928.810 kb on + strandat 6928.811 kb on - strandat 6928.918 kb on + strandat 6928.932 kb on + strandat 6928.932 kb on + strandat 6928.932 kb on + strandat 6928.932 kb on + strandat 6928.932 kb on + strandat 6928.933 kb on - strandat 6928.936 kb on + strandat 6928.936 kb on + strandat 6928.936 kb on + strandat 6928.937 kb on - strandat 6928.938 kb on + strandat 6928.938 kb on + strandat 6928.938 kb on + strandat 6928.938 kb on + strandat 6928.938 kb on + strandat 6928.938 kb on + strandat 6928.939 kb on - strandat 6928.939 kb on - strandat 6928.970 kb on + strandat 6928.971 kb on - strandat 6929.147 kb on + strand, within AO356_29800at 6929.148 kb on - strand, within AO356_29800at 6929.148 kb on - strand, within AO356_29800at 6929.165 kb on + strand, within AO356_29800at 6929.216 kb on + strand, within AO356_29800at 6929.216 kb on + strand, within AO356_29800at 6929.216 kb on + strand, within AO356_29800at 6929.217 kb on - strand, within AO356_29800at 6929.217 kb on - strand, within AO356_29800at 6929.253 kb on - strand, within AO356_29800at 6929.370 kb on + strand, within AO356_29800at 6929.392 kb on + strand, within AO356_29800at 6929.394 kb on + strand, within AO356_29800at 6929.394 kb on + strand, within AO356_29800at 6929.402 kb on + strand, within AO356_29800at 6929.516 kb on + strand, within AO356_29800at 6929.606 kb on + strand, within AO356_29800at 6929.606 kb on + strand, within AO356_29800at 6929.607 kb on - strandat 6929.639 kb on + strand, within AO356_29800at 6929.646 kb on - strand, within AO356_29800

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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6,927,122 + AO356_29785 0.79 +1.9
6,927,139 - AO356_29785 0.81 -1.0
6,927,176 - AO356_29785 0.86 -0.2
6,927,313 + +1.0
6,927,326 - -0.5
6,927,451 + AO356_29790 0.25 +0.2
6,927,472 + AO356_29790 0.28 +0.6
6,927,473 - AO356_29790 0.28 +0.2
6,927,493 - AO356_29790 0.31 -1.3
6,927,495 + AO356_29790 0.32 -0.8
6,927,502 + AO356_29790 0.33 +1.8
6,927,502 + AO356_29790 0.33 +2.2
6,927,559 - AO356_29790 0.41 +1.7
6,927,600 + AO356_29790 0.47 +0.6
6,927,601 - AO356_29790 0.47 -0.2
6,927,602 + AO356_29790 0.47 -0.1
6,927,602 + AO356_29790 0.47 +0.5
6,927,822 + AO356_29790 0.79 +0.8
6,927,823 - AO356_29790 0.79 +0.2
6,927,823 - AO356_29790 0.79 -1.1
6,927,883 - AO356_29790 0.88 -0.4
6,927,942 - +0.4
6,927,996 + -0.4
6,927,996 + +0.5
6,927,997 - +0.1
6,928,060 + -0.1
6,928,178 - AO356_29795 0.22 -0.5
6,928,262 - AO356_29795 0.33 -0.5
6,928,339 + AO356_29795 0.42 -0.5
6,928,807 - +0.5
6,928,810 + -1.7
6,928,810 + -0.1
6,928,811 - -0.8
6,928,918 + +1.2
6,928,932 + +0.8
6,928,932 + +1.1
6,928,932 + +0.6
6,928,932 + -1.8
6,928,932 + -0.2
6,928,933 - -0.8
6,928,936 + -2.1
6,928,936 + -1.2
6,928,936 + -0.5
6,928,937 - -0.2
6,928,938 + +0.1
6,928,938 + +0.8
6,928,938 + -0.3
6,928,938 + +0.2
6,928,938 + +0.2
6,928,938 + -0.1
6,928,939 - -2.0
6,928,939 - +1.5
6,928,970 + -0.0
6,928,971 - +0.8
6,929,147 + AO356_29800 0.14 +0.7
6,929,148 - AO356_29800 0.14 -0.4
6,929,148 - AO356_29800 0.14 -0.7
6,929,165 + AO356_29800 0.16 +0.4
6,929,216 + AO356_29800 0.22 -1.7
6,929,216 + AO356_29800 0.22 +0.2
6,929,216 + AO356_29800 0.22 +0.3
6,929,217 - AO356_29800 0.23 -1.0
6,929,217 - AO356_29800 0.23 -0.1
6,929,253 - AO356_29800 0.27 -0.6
6,929,370 + AO356_29800 0.42 +0.7
6,929,392 + AO356_29800 0.44 -0.6
6,929,394 + AO356_29800 0.45 -1.2
6,929,394 + AO356_29800 0.45 +0.6
6,929,402 + AO356_29800 0.46 +0.7
6,929,516 + AO356_29800 0.60 +0.2
6,929,606 + AO356_29800 0.71 -0.0
6,929,606 + AO356_29800 0.71 -0.6
6,929,607 - +2.8
6,929,639 + AO356_29800 0.75 +0.2
6,929,646 - AO356_29800 0.76 -0.5

Or see this region's nucleotide sequence