Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29405

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29400 and AO356_29405 are separated by 548 nucleotidesAO356_29405 and AO356_29410 overlap by 4 nucleotidesAO356_29410 and AO356_29415 are separated by 88 nucleotides AO356_29400: AO356_29400 - peptidase M20, at 6,838,199 to 6,839,353 _29400 AO356_29405: AO356_29405 - alpha-ketoglutarate dehydrogenase, at 6,839,902 to 6,842,598 _29405 AO356_29410: AO356_29410 - hypothetical protein, at 6,842,595 to 6,842,975 _29410 AO356_29415: AO356_29415 - transketolase, at 6,843,064 to 6,843,522 _29415 Position (kb) 6839 6840 6841 6842 6843Strain fitness (log2 ratio) -2 -1 0 1 2at 6839.129 kb on + strand, within AO356_29400at 6839.129 kb on + strand, within AO356_29400at 6839.130 kb on - strand, within AO356_29400at 6839.130 kb on - strand, within AO356_29400at 6839.385 kb on + strandat 6839.386 kb on - strandat 6839.386 kb on - strandat 6839.402 kb on + strandat 6839.417 kb on + strandat 6839.417 kb on + strandat 6839.417 kb on + strandat 6839.418 kb on - strandat 6839.418 kb on - strandat 6839.422 kb on - strandat 6840.152 kb on + strandat 6840.428 kb on + strand, within AO356_29405at 6840.428 kb on + strand, within AO356_29405at 6840.429 kb on - strand, within AO356_29405at 6840.429 kb on - strand, within AO356_29405at 6840.429 kb on - strand, within AO356_29405at 6840.506 kb on + strand, within AO356_29405at 6840.506 kb on + strand, within AO356_29405at 6840.507 kb on - strand, within AO356_29405at 6840.509 kb on + strand, within AO356_29405at 6840.510 kb on - strand, within AO356_29405at 6840.594 kb on - strand, within AO356_29405at 6840.594 kb on - strand, within AO356_29405at 6840.770 kb on + strand, within AO356_29405at 6840.774 kb on - strand, within AO356_29405at 6840.779 kb on + strand, within AO356_29405at 6840.779 kb on + strand, within AO356_29405at 6840.779 kb on + strand, within AO356_29405at 6840.780 kb on - strand, within AO356_29405at 6840.780 kb on - strand, within AO356_29405at 6840.805 kb on + strand, within AO356_29405at 6840.805 kb on + strand, within AO356_29405at 6840.805 kb on + strand, within AO356_29405at 6840.954 kb on - strand, within AO356_29405at 6840.954 kb on - strand, within AO356_29405at 6841.127 kb on + strand, within AO356_29405at 6841.127 kb on + strand, within AO356_29405at 6841.127 kb on + strand, within AO356_29405at 6841.128 kb on - strand, within AO356_29405at 6841.135 kb on + strand, within AO356_29405at 6841.136 kb on - strand, within AO356_29405at 6841.184 kb on + strand, within AO356_29405at 6841.185 kb on - strand, within AO356_29405at 6841.416 kb on + strand, within AO356_29405at 6841.416 kb on + strand, within AO356_29405at 6841.417 kb on - strand, within AO356_29405at 6841.651 kb on - strand, within AO356_29405at 6842.037 kb on - strand, within AO356_29405at 6842.165 kb on + strand, within AO356_29405at 6842.252 kb on + strand, within AO356_29405at 6842.397 kb on + strandat 6842.405 kb on + strandat 6842.405 kb on + strandat 6842.406 kb on - strandat 6842.406 kb on - strandat 6842.417 kb on + strandat 6842.417 kb on + strandat 6842.418 kb on - strandat 6842.599 kb on - strandat 6842.955 kb on - strandat 6842.955 kb on - strandat 6843.018 kb on - strandat 6843.380 kb on + strand, within AO356_29415at 6843.380 kb on + strand, within AO356_29415at 6843.404 kb on - strand, within AO356_29415at 6843.404 kb on - strand, within AO356_29415at 6843.431 kb on + strand, within AO356_29415at 6843.432 kb on - strand, within AO356_29415at 6843.432 kb on - strand, within AO356_29415at 6843.596 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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6,839,129 + AO356_29400 0.81 +0.3
6,839,129 + AO356_29400 0.81 -1.4
6,839,130 - AO356_29400 0.81 -0.5
6,839,130 - AO356_29400 0.81 +0.0
6,839,385 + +0.2
6,839,386 - +0.0
6,839,386 - +0.2
6,839,402 + -1.4
6,839,417 + -1.3
6,839,417 + -0.8
6,839,417 + -0.8
6,839,418 - -0.0
6,839,418 - -0.3
6,839,422 - -0.3
6,840,152 + +0.0
6,840,428 + AO356_29405 0.20 -1.3
6,840,428 + AO356_29405 0.20 +0.4
6,840,429 - AO356_29405 0.20 -0.7
6,840,429 - AO356_29405 0.20 -0.4
6,840,429 - AO356_29405 0.20 +0.2
6,840,506 + AO356_29405 0.22 +1.2
6,840,506 + AO356_29405 0.22 +0.4
6,840,507 - AO356_29405 0.22 +0.1
6,840,509 + AO356_29405 0.23 +0.0
6,840,510 - AO356_29405 0.23 -0.5
6,840,594 - AO356_29405 0.26 +1.4
6,840,594 - AO356_29405 0.26 -0.2
6,840,770 + AO356_29405 0.32 +0.7
6,840,774 - AO356_29405 0.32 -0.4
6,840,779 + AO356_29405 0.33 -0.2
6,840,779 + AO356_29405 0.33 +1.2
6,840,779 + AO356_29405 0.33 +1.2
6,840,780 - AO356_29405 0.33 +0.7
6,840,780 - AO356_29405 0.33 +1.0
6,840,805 + AO356_29405 0.33 +0.4
6,840,805 + AO356_29405 0.33 -0.5
6,840,805 + AO356_29405 0.33 +1.0
6,840,954 - AO356_29405 0.39 -0.5
6,840,954 - AO356_29405 0.39 -0.2
6,841,127 + AO356_29405 0.45 -0.0
6,841,127 + AO356_29405 0.45 +0.0
6,841,127 + AO356_29405 0.45 +1.3
6,841,128 - AO356_29405 0.45 -0.1
6,841,135 + AO356_29405 0.46 +0.2
6,841,136 - AO356_29405 0.46 +0.9
6,841,184 + AO356_29405 0.48 +0.7
6,841,185 - AO356_29405 0.48 +0.2
6,841,416 + AO356_29405 0.56 -0.7
6,841,416 + AO356_29405 0.56 +0.0
6,841,417 - AO356_29405 0.56 +2.2
6,841,651 - AO356_29405 0.65 -0.5
6,842,037 - AO356_29405 0.79 -0.2
6,842,165 + AO356_29405 0.84 +0.6
6,842,252 + AO356_29405 0.87 -0.4
6,842,397 + +0.2
6,842,405 + +0.9
6,842,405 + +0.8
6,842,406 - +0.6
6,842,406 - +0.5
6,842,417 + +1.0
6,842,417 + +0.7
6,842,418 - -0.0
6,842,599 - +0.0
6,842,955 - +1.0
6,842,955 - +1.8
6,843,018 - +0.2
6,843,380 + AO356_29415 0.69 -0.3
6,843,380 + AO356_29415 0.69 -1.3
6,843,404 - AO356_29415 0.74 +0.6
6,843,404 - AO356_29415 0.74 -1.1
6,843,431 + AO356_29415 0.80 -2.6
6,843,432 - AO356_29415 0.80 -0.6
6,843,432 - AO356_29415 0.80 -0.5
6,843,596 + +0.2

Or see this region's nucleotide sequence