Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27190

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27185 and AO356_27190 are separated by 23 nucleotidesAO356_27190 and AO356_27195 overlap by 4 nucleotides AO356_27185: AO356_27185 - hypothetical protein, at 6,195,986 to 6,197,503 _27185 AO356_27190: AO356_27190 - hypothetical protein, at 6,197,527 to 6,198,498 _27190 AO356_27195: AO356_27195 - hypothetical protein, at 6,198,495 to 6,199,598 _27195 Position (kb) 6197 6198 6199Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 6196.604 kb on - strand, within AO356_27185at 6196.651 kb on + strand, within AO356_27185at 6196.651 kb on + strand, within AO356_27185at 6196.651 kb on + strand, within AO356_27185at 6196.652 kb on - strand, within AO356_27185at 6196.700 kb on - strand, within AO356_27185at 6196.700 kb on - strand, within AO356_27185at 6196.807 kb on - strand, within AO356_27185at 6196.807 kb on - strand, within AO356_27185at 6196.916 kb on - strand, within AO356_27185at 6196.916 kb on - strand, within AO356_27185at 6196.934 kb on + strand, within AO356_27185at 6196.935 kb on - strand, within AO356_27185at 6196.951 kb on - strand, within AO356_27185at 6196.979 kb on - strand, within AO356_27185at 6197.036 kb on - strand, within AO356_27185at 6197.204 kb on - strand, within AO356_27185at 6197.566 kb on - strandat 6197.566 kb on - strandat 6197.597 kb on - strandat 6197.597 kb on - strandat 6197.597 kb on - strandat 6197.625 kb on - strand, within AO356_27190at 6197.678 kb on - strand, within AO356_27190at 6197.788 kb on + strand, within AO356_27190at 6197.788 kb on + strand, within AO356_27190at 6197.799 kb on - strand, within AO356_27190at 6197.799 kb on - strand, within AO356_27190at 6197.809 kb on - strand, within AO356_27190at 6197.823 kb on + strand, within AO356_27190at 6197.823 kb on + strand, within AO356_27190at 6197.824 kb on - strand, within AO356_27190at 6197.825 kb on + strand, within AO356_27190at 6197.825 kb on + strand, within AO356_27190at 6197.825 kb on + strand, within AO356_27190at 6197.825 kb on + strand, within AO356_27190at 6198.042 kb on + strand, within AO356_27190at 6198.079 kb on - strand, within AO356_27190at 6198.079 kb on - strand, within AO356_27190at 6198.080 kb on + strand, within AO356_27190at 6198.080 kb on + strand, within AO356_27190at 6198.081 kb on - strand, within AO356_27190at 6198.081 kb on - strand, within AO356_27190at 6198.081 kb on - strand, within AO356_27190at 6198.081 kb on - strand, within AO356_27190at 6198.081 kb on - strand, within AO356_27190at 6198.108 kb on - strand, within AO356_27190at 6198.163 kb on + strand, within AO356_27190at 6198.243 kb on + strand, within AO356_27190at 6198.244 kb on - strand, within AO356_27190at 6198.291 kb on - strand, within AO356_27190at 6198.457 kb on - strandat 6198.604 kb on + strandat 6198.666 kb on + strand, within AO356_27195at 6198.677 kb on + strand, within AO356_27195at 6198.677 kb on + strand, within AO356_27195at 6198.677 kb on + strand, within AO356_27195at 6198.678 kb on - strand, within AO356_27195at 6198.727 kb on - strand, within AO356_27195at 6198.777 kb on + strand, within AO356_27195at 6198.778 kb on - strand, within AO356_27195at 6198.845 kb on - strand, within AO356_27195at 6198.845 kb on - strand, within AO356_27195at 6198.928 kb on - strand, within AO356_27195at 6198.955 kb on + strand, within AO356_27195at 6199.023 kb on + strand, within AO356_27195at 6199.134 kb on - strand, within AO356_27195at 6199.267 kb on + strand, within AO356_27195at 6199.272 kb on + strand, within AO356_27195at 6199.279 kb on - strand, within AO356_27195at 6199.279 kb on - strand, within AO356_27195at 6199.279 kb on - strand, within AO356_27195at 6199.334 kb on + strand, within AO356_27195at 6199.335 kb on - strand, within AO356_27195at 6199.351 kb on + strand, within AO356_27195at 6199.363 kb on + strand, within AO356_27195

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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6,196,604 - AO356_27185 0.41 -0.3
6,196,651 + AO356_27185 0.44 +3.0
6,196,651 + AO356_27185 0.44 +2.8
6,196,651 + AO356_27185 0.44 +3.9
6,196,652 - AO356_27185 0.44 +0.8
6,196,700 - AO356_27185 0.47 +0.3
6,196,700 - AO356_27185 0.47 +0.1
6,196,807 - AO356_27185 0.54 -0.1
6,196,807 - AO356_27185 0.54 -0.7
6,196,916 - AO356_27185 0.61 +0.1
6,196,916 - AO356_27185 0.61 -0.5
6,196,934 + AO356_27185 0.62 +1.9
6,196,935 - AO356_27185 0.63 +1.9
6,196,951 - AO356_27185 0.64 -1.2
6,196,979 - AO356_27185 0.65 -1.9
6,197,036 - AO356_27185 0.69 +0.0
6,197,204 - AO356_27185 0.80 +0.1
6,197,566 - -0.9
6,197,566 - +0.5
6,197,597 - -0.3
6,197,597 - -0.3
6,197,597 - -1.1
6,197,625 - AO356_27190 0.10 -0.1
6,197,678 - AO356_27190 0.16 +0.4
6,197,788 + AO356_27190 0.27 +0.3
6,197,788 + AO356_27190 0.27 -0.2
6,197,799 - AO356_27190 0.28 -0.7
6,197,799 - AO356_27190 0.28 +0.1
6,197,809 - AO356_27190 0.29 +1.7
6,197,823 + AO356_27190 0.30 -0.1
6,197,823 + AO356_27190 0.30 +0.1
6,197,824 - AO356_27190 0.31 -1.1
6,197,825 + AO356_27190 0.31 +0.5
6,197,825 + AO356_27190 0.31 +0.1
6,197,825 + AO356_27190 0.31 -1.5
6,197,825 + AO356_27190 0.31 +0.1
6,198,042 + AO356_27190 0.53 +0.1
6,198,079 - AO356_27190 0.57 +0.6
6,198,079 - AO356_27190 0.57 +0.9
6,198,080 + AO356_27190 0.57 -0.1
6,198,080 + AO356_27190 0.57 -0.3
6,198,081 - AO356_27190 0.57 -0.8
6,198,081 - AO356_27190 0.57 -0.1
6,198,081 - AO356_27190 0.57 -2.5
6,198,081 - AO356_27190 0.57 -0.9
6,198,081 - AO356_27190 0.57 -0.3
6,198,108 - AO356_27190 0.60 -0.6
6,198,163 + AO356_27190 0.65 +0.2
6,198,243 + AO356_27190 0.74 -0.6
6,198,244 - AO356_27190 0.74 -1.1
6,198,291 - AO356_27190 0.79 -1.1
6,198,457 - +0.3
6,198,604 + +0.5
6,198,666 + AO356_27195 0.15 -0.6
6,198,677 + AO356_27195 0.16 -0.6
6,198,677 + AO356_27195 0.16 +0.7
6,198,677 + AO356_27195 0.16 +0.7
6,198,678 - AO356_27195 0.17 +0.4
6,198,727 - AO356_27195 0.21 -1.9
6,198,777 + AO356_27195 0.26 -0.4
6,198,778 - AO356_27195 0.26 -0.5
6,198,845 - AO356_27195 0.32 -0.5
6,198,845 - AO356_27195 0.32 +1.1
6,198,928 - AO356_27195 0.39 +1.1
6,198,955 + AO356_27195 0.42 +0.1
6,199,023 + AO356_27195 0.48 -0.5
6,199,134 - AO356_27195 0.58 +0.1
6,199,267 + AO356_27195 0.70 -1.1
6,199,272 + AO356_27195 0.70 -0.3
6,199,279 - AO356_27195 0.71 +0.2
6,199,279 - AO356_27195 0.71 -0.7
6,199,279 - AO356_27195 0.71 +0.1
6,199,334 + AO356_27195 0.76 +0.3
6,199,335 - AO356_27195 0.76 +0.8
6,199,351 + AO356_27195 0.78 +1.4
6,199,363 + AO356_27195 0.79 +0.8

Or see this region's nucleotide sequence