Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_25575

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_25570 and AO356_25575 are separated by 52 nucleotidesAO356_25575 and AO356_25580 are separated by 84 nucleotides AO356_25570: AO356_25570 - MFS transporter, at 5,780,018 to 5,781,322 _25570 AO356_25575: AO356_25575 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 5,781,375 to 5,781,767 _25575 AO356_25580: AO356_25580 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 5,781,852 to 5,782,709 _25580 Position (kb) 5781 5782Strain fitness (log2 ratio) -2 -1 0 1at 5780.460 kb on - strand, within AO356_25570at 5781.592 kb on + strand, within AO356_25575at 5781.746 kb on - strandat 5781.804 kb on + strandat 5781.805 kb on - strandat 5782.313 kb on - strand, within AO356_25580at 5782.313 kb on - strand, within AO356_25580at 5782.442 kb on - strand, within AO356_25580at 5782.519 kb on + strand, within AO356_25580at 5782.520 kb on - strand, within AO356_25580at 5782.661 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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5,780,460 - AO356_25570 0.34 -0.6
5,781,592 + AO356_25575 0.55 -2.0
5,781,746 - +0.3
5,781,804 + +0.5
5,781,805 - -0.2
5,782,313 - AO356_25580 0.54 -0.3
5,782,313 - AO356_25580 0.54 -1.2
5,782,442 - AO356_25580 0.69 -1.4
5,782,519 + AO356_25580 0.78 +0.0
5,782,520 - AO356_25580 0.78 -0.8
5,782,661 - +0.2

Or see this region's nucleotide sequence