Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25560 and AO356_25565 are separated by 14 nucleotides AO356_25565 and AO356_25570 are separated by 12 nucleotides AO356_25570 and AO356_25575 are separated by 52 nucleotides AO356_25575 and AO356_25580 are separated by 84 nucleotides
AO356_25560: AO356_25560 - 2-keto-3-deoxy-L-rhamnonate aldolase, at 5,778,390 to 5,779,187
_25560
AO356_25565: AO356_25565 - 2-oxo-hepta-3-ene-1,7-dioate hydratase, at 5,779,202 to 5,780,005
_25565
AO356_25570: AO356_25570 - MFS transporter, at 5,780,018 to 5,781,322
_25570
AO356_25575: AO356_25575 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 5,781,375 to 5,781,767
_25575
AO356_25580: AO356_25580 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 5,781,852 to 5,782,709
_25580
Position (kb) 5780
5781
5782 Strain fitness (log2 ratio) -2
-1
0
1 at 5779.102 kb on + strand, within AO356_25560 at 5779.102 kb on + strand, within AO356_25560 at 5779.103 kb on - strand, within AO356_25560 at 5779.103 kb on - strand, within AO356_25560 at 5779.767 kb on + strand, within AO356_25565 at 5779.888 kb on - strand, within AO356_25565 at 5780.020 kb on - strand at 5780.090 kb on + strand at 5780.091 kb on - strand at 5780.095 kb on - strand at 5780.460 kb on - strand, within AO356_25570 at 5781.592 kb on + strand, within AO356_25575 at 5781.746 kb on - strand at 5781.804 kb on + strand at 5781.805 kb on - strand at 5782.313 kb on - strand, within AO356_25580 at 5782.313 kb on - strand, within AO356_25580
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 5,779,102 + AO356_25560 0.89 -1.0 5,779,102 + AO356_25560 0.89 -0.6 5,779,103 - AO356_25560 0.89 -0.4 5,779,103 - AO356_25560 0.89 -0.5 5,779,767 + AO356_25565 0.70 -1.1 5,779,888 - AO356_25565 0.85 +0.6 5,780,020 - -0.5 5,780,090 + -0.4 5,780,091 - +0.4 5,780,095 - +0.3 5,780,460 - AO356_25570 0.34 -0.6 5,781,592 + AO356_25575 0.55 -2.0 5,781,746 - +0.3 5,781,804 + +0.5 5,781,805 - -0.2 5,782,313 - AO356_25580 0.54 -0.3 5,782,313 - AO356_25580 0.54 -1.2
Or see this region's nucleotide sequence