Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23375

Experiment: Thallium(I) acetate 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_23370 and AO356_23375 are separated by 113 nucleotidesAO356_23375 and AO356_23380 are separated by 94 nucleotides AO356_23370: AO356_23370 - aldo/keto reductase, at 5,241,045 to 5,242,040 _23370 AO356_23375: AO356_23375 - transcriptional regulator, at 5,242,154 to 5,243,077 _23375 AO356_23380: AO356_23380 - hypothetical protein, at 5,243,172 to 5,244,374 _23380 Position (kb) 5242 5243 5244Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5241.185 kb on - strand, within AO356_23370at 5241.465 kb on - strand, within AO356_23370at 5241.673 kb on + strand, within AO356_23370at 5241.674 kb on - strand, within AO356_23370at 5241.674 kb on - strand, within AO356_23370at 5241.674 kb on - strand, within AO356_23370at 5241.676 kb on + strand, within AO356_23370at 5241.676 kb on + strand, within AO356_23370at 5241.677 kb on - strand, within AO356_23370at 5241.677 kb on - strand, within AO356_23370at 5241.677 kb on - strand, within AO356_23370at 5241.688 kb on + strand, within AO356_23370at 5241.689 kb on - strand, within AO356_23370at 5241.689 kb on - strand, within AO356_23370at 5241.689 kb on - strand, within AO356_23370at 5241.808 kb on + strand, within AO356_23370at 5241.808 kb on + strand, within AO356_23370at 5241.809 kb on - strand, within AO356_23370at 5241.809 kb on - strand, within AO356_23370at 5241.871 kb on + strand, within AO356_23370at 5241.871 kb on + strand, within AO356_23370at 5241.871 kb on + strand, within AO356_23370at 5241.871 kb on + strand, within AO356_23370at 5241.872 kb on - strand, within AO356_23370at 5241.872 kb on - strand, within AO356_23370at 5241.872 kb on - strand, within AO356_23370at 5241.961 kb on + strandat 5241.961 kb on + strandat 5241.962 kb on - strandat 5242.006 kb on + strandat 5242.006 kb on + strandat 5242.046 kb on + strandat 5242.047 kb on - strandat 5242.047 kb on - strandat 5242.047 kb on - strandat 5242.119 kb on - strandat 5242.135 kb on + strandat 5242.346 kb on + strand, within AO356_23375at 5242.346 kb on + strand, within AO356_23375at 5242.346 kb on + strand, within AO356_23375at 5242.346 kb on + strand, within AO356_23375at 5242.346 kb on + strand, within AO356_23375at 5242.347 kb on - strand, within AO356_23375at 5242.347 kb on - strand, within AO356_23375at 5242.347 kb on - strand, within AO356_23375at 5242.350 kb on - strand, within AO356_23375at 5242.350 kb on - strand, within AO356_23375at 5242.350 kb on - strand, within AO356_23375at 5242.496 kb on + strand, within AO356_23375at 5242.594 kb on + strand, within AO356_23375at 5242.664 kb on + strand, within AO356_23375at 5242.832 kb on + strand, within AO356_23375at 5242.832 kb on + strand, within AO356_23375at 5242.832 kb on + strand, within AO356_23375at 5242.832 kb on + strand, within AO356_23375at 5242.832 kb on + strand, within AO356_23375at 5242.832 kb on + strand, within AO356_23375at 5242.832 kb on + strand, within AO356_23375at 5242.833 kb on - strand, within AO356_23375at 5242.833 kb on - strand, within AO356_23375at 5242.833 kb on - strand, within AO356_23375at 5242.836 kb on + strand, within AO356_23375at 5242.836 kb on + strand, within AO356_23375at 5242.836 kb on + strand, within AO356_23375at 5242.836 kb on + strand, within AO356_23375at 5242.836 kb on + strand, within AO356_23375at 5242.837 kb on - strand, within AO356_23375at 5242.837 kb on - strand, within AO356_23375at 5242.837 kb on - strand, within AO356_23375at 5242.837 kb on - strand, within AO356_23375at 5242.837 kb on - strand, within AO356_23375at 5242.923 kb on + strand, within AO356_23375at 5242.924 kb on - strand, within AO356_23375at 5242.924 kb on - strand, within AO356_23375at 5242.935 kb on - strand, within AO356_23375at 5243.110 kb on - strandat 5243.110 kb on - strandat 5243.134 kb on + strandat 5243.134 kb on + strandat 5243.135 kb on - strandat 5243.140 kb on + strandat 5243.140 kb on + strandat 5243.140 kb on + strandat 5243.140 kb on + strandat 5243.141 kb on - strandat 5243.141 kb on - strandat 5243.141 kb on - strandat 5243.141 kb on - strandat 5243.239 kb on + strandat 5243.269 kb on + strandat 5243.270 kb on - strandat 5243.426 kb on - strand, within AO356_23380at 5243.468 kb on + strand, within AO356_23380at 5243.468 kb on + strand, within AO356_23380at 5243.468 kb on + strand, within AO356_23380at 5243.470 kb on + strand, within AO356_23380at 5243.470 kb on + strand, within AO356_23380at 5243.471 kb on - strand, within AO356_23380at 5243.509 kb on - strand, within AO356_23380at 5243.597 kb on + strand, within AO356_23380at 5243.598 kb on - strand, within AO356_23380at 5243.598 kb on - strand, within AO356_23380at 5243.598 kb on - strand, within AO356_23380at 5243.611 kb on + strand, within AO356_23380at 5243.664 kb on + strand, within AO356_23380at 5243.673 kb on + strand, within AO356_23380at 5243.673 kb on + strand, within AO356_23380at 5243.673 kb on + strand, within AO356_23380at 5243.674 kb on - strand, within AO356_23380at 5243.674 kb on - strand, within AO356_23380at 5243.674 kb on - strand, within AO356_23380at 5243.761 kb on - strand, within AO356_23380at 5243.780 kb on - strand, within AO356_23380at 5243.891 kb on + strand, within AO356_23380at 5244.003 kb on - strand, within AO356_23380at 5244.071 kb on + strand, within AO356_23380at 5244.074 kb on + strand, within AO356_23380at 5244.075 kb on - strand, within AO356_23380

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
remove
5,241,185 - AO356_23370 0.14 -0.1
5,241,465 - AO356_23370 0.42 +0.6
5,241,673 + AO356_23370 0.63 -0.0
5,241,674 - AO356_23370 0.63 +0.4
5,241,674 - AO356_23370 0.63 +0.9
5,241,674 - AO356_23370 0.63 +0.3
5,241,676 + AO356_23370 0.63 +1.3
5,241,676 + AO356_23370 0.63 -0.7
5,241,677 - AO356_23370 0.63 +1.0
5,241,677 - AO356_23370 0.63 +0.2
5,241,677 - AO356_23370 0.63 +0.6
5,241,688 + AO356_23370 0.65 -0.9
5,241,689 - AO356_23370 0.65 -1.0
5,241,689 - AO356_23370 0.65 +2.3
5,241,689 - AO356_23370 0.65 +0.6
5,241,808 + AO356_23370 0.77 +0.1
5,241,808 + AO356_23370 0.77 -0.9
5,241,809 - AO356_23370 0.77 -0.1
5,241,809 - AO356_23370 0.77 -1.7
5,241,871 + AO356_23370 0.83 +0.3
5,241,871 + AO356_23370 0.83 +0.0
5,241,871 + AO356_23370 0.83 -0.0
5,241,871 + AO356_23370 0.83 -0.0
5,241,872 - AO356_23370 0.83 +0.5
5,241,872 - AO356_23370 0.83 +0.3
5,241,872 - AO356_23370 0.83 -1.3
5,241,961 + +0.9
5,241,961 + +0.1
5,241,962 - +0.3
5,242,006 + +0.5
5,242,006 + +0.1
5,242,046 + -1.3
5,242,047 - +0.5
5,242,047 - +0.7
5,242,047 - +0.9
5,242,119 - +0.1
5,242,135 + -0.1
5,242,346 + AO356_23375 0.21 -0.0
5,242,346 + AO356_23375 0.21 +0.5
5,242,346 + AO356_23375 0.21 -0.3
5,242,346 + AO356_23375 0.21 -0.2
5,242,346 + AO356_23375 0.21 +0.9
5,242,347 - AO356_23375 0.21 +0.9
5,242,347 - AO356_23375 0.21 +0.1
5,242,347 - AO356_23375 0.21 +1.3
5,242,350 - AO356_23375 0.21 -0.7
5,242,350 - AO356_23375 0.21 -1.1
5,242,350 - AO356_23375 0.21 +1.0
5,242,496 + AO356_23375 0.37 +0.4
5,242,594 + AO356_23375 0.48 +0.7
5,242,664 + AO356_23375 0.55 -0.4
5,242,832 + AO356_23375 0.73 -0.4
5,242,832 + AO356_23375 0.73 -2.0
5,242,832 + AO356_23375 0.73 +1.2
5,242,832 + AO356_23375 0.73 -0.3
5,242,832 + AO356_23375 0.73 -1.7
5,242,832 + AO356_23375 0.73 -0.2
5,242,832 + AO356_23375 0.73 +1.1
5,242,833 - AO356_23375 0.73 +1.6
5,242,833 - AO356_23375 0.73 -0.7
5,242,833 - AO356_23375 0.73 +0.6
5,242,836 + AO356_23375 0.74 -0.6
5,242,836 + AO356_23375 0.74 -0.1
5,242,836 + AO356_23375 0.74 +0.3
5,242,836 + AO356_23375 0.74 +1.9
5,242,836 + AO356_23375 0.74 +0.1
5,242,837 - AO356_23375 0.74 -0.6
5,242,837 - AO356_23375 0.74 -0.0
5,242,837 - AO356_23375 0.74 +0.3
5,242,837 - AO356_23375 0.74 +0.3
5,242,837 - AO356_23375 0.74 +1.5
5,242,923 + AO356_23375 0.83 -0.3
5,242,924 - AO356_23375 0.83 -0.7
5,242,924 - AO356_23375 0.83 -1.4
5,242,935 - AO356_23375 0.85 +0.1
5,243,110 - -0.1
5,243,110 - +1.5
5,243,134 + -0.4
5,243,134 + +0.3
5,243,135 - +0.9
5,243,140 + -0.1
5,243,140 + -0.0
5,243,140 + +0.3
5,243,140 + +0.3
5,243,141 - +0.9
5,243,141 - +0.9
5,243,141 - -2.4
5,243,141 - -0.7
5,243,239 + -0.5
5,243,269 + -1.3
5,243,270 - +0.6
5,243,426 - AO356_23380 0.21 -0.3
5,243,468 + AO356_23380 0.25 +0.1
5,243,468 + AO356_23380 0.25 +0.7
5,243,468 + AO356_23380 0.25 +0.3
5,243,470 + AO356_23380 0.25 +0.6
5,243,470 + AO356_23380 0.25 -1.0
5,243,471 - AO356_23380 0.25 +0.3
5,243,509 - AO356_23380 0.28 -0.3
5,243,597 + AO356_23380 0.35 -0.6
5,243,598 - AO356_23380 0.35 -1.3
5,243,598 - AO356_23380 0.35 -0.4
5,243,598 - AO356_23380 0.35 -0.9
5,243,611 + AO356_23380 0.36 -0.4
5,243,664 + AO356_23380 0.41 +0.3
5,243,673 + AO356_23380 0.42 -0.2
5,243,673 + AO356_23380 0.42 -0.3
5,243,673 + AO356_23380 0.42 +0.1
5,243,674 - AO356_23380 0.42 -0.2
5,243,674 - AO356_23380 0.42 -0.2
5,243,674 - AO356_23380 0.42 -0.5
5,243,761 - AO356_23380 0.49 +1.3
5,243,780 - AO356_23380 0.51 +0.3
5,243,891 + AO356_23380 0.60 -1.6
5,244,003 - AO356_23380 0.69 +3.1
5,244,071 + AO356_23380 0.75 -0.7
5,244,074 + AO356_23380 0.75 +0.3
5,244,075 - AO356_23380 0.75 +0.1

Or see this region's nucleotide sequence