Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22890

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22885 and AO356_22890 are separated by 95 nucleotidesAO356_22890 and AO356_22895 are separated by 222 nucleotides AO356_22885: AO356_22885 - hypothetical protein, at 5,108,801 to 5,109,604 _22885 AO356_22890: AO356_22890 - hypothetical protein, at 5,109,700 to 5,111,709 _22890 AO356_22895: AO356_22895 - hypothetical protein, at 5,111,932 to 5,114,172 _22895 Position (kb) 5109 5110 5111 5112Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5108.796 kb on + strandat 5108.796 kb on + strandat 5108.796 kb on + strandat 5108.797 kb on - strandat 5108.800 kb on + strandat 5108.800 kb on + strandat 5108.801 kb on - strandat 5108.801 kb on - strandat 5108.881 kb on + strandat 5108.881 kb on + strandat 5108.882 kb on - strand, within AO356_22885at 5109.013 kb on - strand, within AO356_22885at 5109.015 kb on + strand, within AO356_22885at 5109.016 kb on - strand, within AO356_22885at 5109.016 kb on - strand, within AO356_22885at 5109.057 kb on + strand, within AO356_22885at 5109.057 kb on + strand, within AO356_22885at 5109.061 kb on + strand, within AO356_22885at 5109.062 kb on - strand, within AO356_22885at 5109.146 kb on + strand, within AO356_22885at 5109.175 kb on - strand, within AO356_22885at 5109.231 kb on - strand, within AO356_22885at 5109.324 kb on + strand, within AO356_22885at 5109.565 kb on + strandat 5109.743 kb on + strandat 5109.863 kb on + strandat 5109.863 kb on + strandat 5109.868 kb on + strandat 5109.869 kb on - strandat 5109.869 kb on - strandat 5109.869 kb on - strandat 5109.977 kb on + strand, within AO356_22890at 5109.985 kb on - strand, within AO356_22890at 5110.030 kb on + strand, within AO356_22890at 5110.031 kb on - strand, within AO356_22890at 5110.084 kb on - strand, within AO356_22890at 5110.087 kb on + strand, within AO356_22890at 5110.104 kb on + strand, within AO356_22890at 5110.132 kb on + strand, within AO356_22890at 5110.133 kb on - strand, within AO356_22890at 5110.158 kb on + strand, within AO356_22890at 5110.246 kb on + strand, within AO356_22890at 5110.247 kb on - strand, within AO356_22890at 5110.390 kb on + strand, within AO356_22890at 5110.391 kb on - strand, within AO356_22890at 5110.454 kb on - strand, within AO356_22890at 5110.454 kb on - strand, within AO356_22890at 5110.457 kb on + strand, within AO356_22890at 5110.458 kb on - strand, within AO356_22890at 5110.477 kb on - strand, within AO356_22890at 5110.477 kb on - strand, within AO356_22890at 5110.505 kb on - strand, within AO356_22890at 5110.522 kb on - strand, within AO356_22890at 5110.522 kb on - strand, within AO356_22890at 5110.608 kb on + strand, within AO356_22890at 5110.609 kb on - strand, within AO356_22890at 5110.609 kb on - strand, within AO356_22890at 5110.652 kb on + strand, within AO356_22890at 5110.652 kb on + strand, within AO356_22890at 5110.836 kb on + strand, within AO356_22890at 5110.974 kb on - strand, within AO356_22890at 5111.057 kb on + strand, within AO356_22890at 5111.062 kb on + strand, within AO356_22890at 5111.063 kb on - strand, within AO356_22890at 5111.063 kb on - strand, within AO356_22890at 5111.115 kb on + strand, within AO356_22890at 5111.124 kb on + strand, within AO356_22890at 5111.124 kb on + strand, within AO356_22890at 5111.124 kb on + strand, within AO356_22890at 5111.194 kb on + strand, within AO356_22890at 5111.195 kb on - strand, within AO356_22890at 5111.195 kb on - strand, within AO356_22890at 5111.197 kb on - strand, within AO356_22890at 5111.259 kb on + strand, within AO356_22890at 5111.365 kb on - strand, within AO356_22890at 5111.437 kb on + strand, within AO356_22890at 5111.496 kb on + strand, within AO356_22890at 5111.537 kb on + strandat 5111.541 kb on + strandat 5111.542 kb on - strandat 5111.542 kb on - strandat 5111.545 kb on + strandat 5111.545 kb on + strandat 5111.546 kb on - strandat 5111.593 kb on + strandat 5111.594 kb on - strandat 5111.595 kb on + strandat 5111.651 kb on - strandat 5111.651 kb on - strandat 5111.680 kb on + strandat 5111.776 kb on - strandat 5111.844 kb on + strandat 5111.844 kb on + strandat 5111.845 kb on - strandat 5111.928 kb on + strandat 5111.928 kb on + strandat 5111.929 kb on - strandat 5111.931 kb on + strandat 5111.932 kb on - strandat 5111.984 kb on + strandat 5111.984 kb on + strandat 5111.984 kb on + strandat 5111.985 kb on - strandat 5111.985 kb on - strandat 5111.996 kb on + strandat 5111.996 kb on + strandat 5111.996 kb on + strandat 5112.096 kb on + strandat 5112.097 kb on - strandat 5112.097 kb on - strandat 5112.097 kb on - strandat 5112.298 kb on - strand, within AO356_22895at 5112.375 kb on + strand, within AO356_22895at 5112.375 kb on + strand, within AO356_22895at 5112.375 kb on + strand, within AO356_22895at 5112.375 kb on + strand, within AO356_22895at 5112.375 kb on + strand, within AO356_22895at 5112.375 kb on + strand, within AO356_22895at 5112.375 kb on + strand, within AO356_22895at 5112.376 kb on - strand, within AO356_22895at 5112.415 kb on + strand, within AO356_22895at 5112.595 kb on - strand, within AO356_22895at 5112.595 kb on - strand, within AO356_22895at 5112.595 kb on - strand, within AO356_22895at 5112.595 kb on - strand, within AO356_22895at 5112.595 kb on - strand, within AO356_22895at 5112.595 kb on - strand, within AO356_22895at 5112.658 kb on - strand, within AO356_22895at 5112.675 kb on + strand, within AO356_22895at 5112.676 kb on - strand, within AO356_22895

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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5,108,796 + +0.3
5,108,796 + +0.4
5,108,796 + +0.3
5,108,797 - -1.1
5,108,800 + +2.9
5,108,800 + +1.6
5,108,801 - +0.6
5,108,801 - -0.4
5,108,881 + +0.3
5,108,881 + -0.2
5,108,882 - AO356_22885 0.10 +1.3
5,109,013 - AO356_22885 0.26 -1.7
5,109,015 + AO356_22885 0.27 -0.1
5,109,016 - AO356_22885 0.27 -0.4
5,109,016 - AO356_22885 0.27 -0.3
5,109,057 + AO356_22885 0.32 -0.3
5,109,057 + AO356_22885 0.32 +0.0
5,109,061 + AO356_22885 0.32 -0.2
5,109,062 - AO356_22885 0.32 -1.3
5,109,146 + AO356_22885 0.43 +0.6
5,109,175 - AO356_22885 0.47 +0.7
5,109,231 - AO356_22885 0.53 -0.5
5,109,324 + AO356_22885 0.65 -0.7
5,109,565 + -0.4
5,109,743 + +1.9
5,109,863 + +0.7
5,109,863 + +0.6
5,109,868 + +0.3
5,109,869 - +0.3
5,109,869 - +0.6
5,109,869 - -0.3
5,109,977 + AO356_22890 0.14 +0.7
5,109,985 - AO356_22890 0.14 +0.5
5,110,030 + AO356_22890 0.16 +1.3
5,110,031 - AO356_22890 0.16 +0.7
5,110,084 - AO356_22890 0.19 -0.9
5,110,087 + AO356_22890 0.19 -0.5
5,110,104 + AO356_22890 0.20 -1.8
5,110,132 + AO356_22890 0.21 -1.3
5,110,133 - AO356_22890 0.22 +0.6
5,110,158 + AO356_22890 0.23 +0.1
5,110,246 + AO356_22890 0.27 -0.9
5,110,247 - AO356_22890 0.27 +0.3
5,110,390 + AO356_22890 0.34 +0.3
5,110,391 - AO356_22890 0.34 -0.4
5,110,454 - AO356_22890 0.38 +1.1
5,110,454 - AO356_22890 0.38 +1.0
5,110,457 + AO356_22890 0.38 -1.1
5,110,458 - AO356_22890 0.38 +2.9
5,110,477 - AO356_22890 0.39 +0.9
5,110,477 - AO356_22890 0.39 +0.0
5,110,505 - AO356_22890 0.40 +2.3
5,110,522 - AO356_22890 0.41 -0.1
5,110,522 - AO356_22890 0.41 +0.3
5,110,608 + AO356_22890 0.45 +0.9
5,110,609 - AO356_22890 0.45 -0.7
5,110,609 - AO356_22890 0.45 -0.7
5,110,652 + AO356_22890 0.47 -1.7
5,110,652 + AO356_22890 0.47 -0.5
5,110,836 + AO356_22890 0.57 +0.3
5,110,974 - AO356_22890 0.63 -1.3
5,111,057 + AO356_22890 0.68 -0.3
5,111,062 + AO356_22890 0.68 -0.5
5,111,063 - AO356_22890 0.68 -0.3
5,111,063 - AO356_22890 0.68 -0.5
5,111,115 + AO356_22890 0.70 +0.6
5,111,124 + AO356_22890 0.71 +0.3
5,111,124 + AO356_22890 0.71 +1.0
5,111,124 + AO356_22890 0.71 -1.4
5,111,194 + AO356_22890 0.74 -0.7
5,111,195 - AO356_22890 0.74 -1.1
5,111,195 - AO356_22890 0.74 -0.1
5,111,197 - AO356_22890 0.74 -1.0
5,111,259 + AO356_22890 0.78 -2.7
5,111,365 - AO356_22890 0.83 +1.0
5,111,437 + AO356_22890 0.86 -0.4
5,111,496 + AO356_22890 0.89 +0.2
5,111,537 + +0.7
5,111,541 + -0.5
5,111,542 - -0.2
5,111,542 - +2.3
5,111,545 + -0.4
5,111,545 + -0.5
5,111,546 - -0.3
5,111,593 + +1.3
5,111,594 - +0.3
5,111,595 + -0.5
5,111,651 - +0.3
5,111,651 - -0.6
5,111,680 + +0.3
5,111,776 - -0.4
5,111,844 + +0.6
5,111,844 + +2.3
5,111,845 - -1.0
5,111,928 + +1.3
5,111,928 + -2.5
5,111,929 - +0.6
5,111,931 + +0.1
5,111,932 - +0.5
5,111,984 + +0.3
5,111,984 + -0.7
5,111,984 + -0.3
5,111,985 - -0.2
5,111,985 - -0.4
5,111,996 + -0.9
5,111,996 + +0.3
5,111,996 + +2.3
5,112,096 + -0.2
5,112,097 - -0.7
5,112,097 - +0.4
5,112,097 - +1.0
5,112,298 - AO356_22895 0.16 -1.1
5,112,375 + AO356_22895 0.20 -0.7
5,112,375 + AO356_22895 0.20 -0.4
5,112,375 + AO356_22895 0.20 +0.3
5,112,375 + AO356_22895 0.20 +0.3
5,112,375 + AO356_22895 0.20 -0.3
5,112,375 + AO356_22895 0.20 +0.3
5,112,375 + AO356_22895 0.20 -0.2
5,112,376 - AO356_22895 0.20 -0.2
5,112,415 + AO356_22895 0.22 -1.2
5,112,595 - AO356_22895 0.30 -1.1
5,112,595 - AO356_22895 0.30 -0.0
5,112,595 - AO356_22895 0.30 +0.0
5,112,595 - AO356_22895 0.30 -1.9
5,112,595 - AO356_22895 0.30 +0.6
5,112,595 - AO356_22895 0.30 +0.0
5,112,658 - AO356_22895 0.32 +0.3
5,112,675 + AO356_22895 0.33 -2.7
5,112,676 - AO356_22895 0.33 -0.1

Or see this region's nucleotide sequence